Passer montanus (Eurasian tree sparrow): 120509378
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Entry
120509378 CDS
T07277
Symbol
ALMS1
Name
(RefSeq) Alstrom syndrome protein 1 isoform X1
KO
K16741
alstrom syndrome protein 1
Organism
pmoa
Passer montanus (Eurasian tree sparrow)
Brite
KEGG Orthology (KO) [BR:
pmoa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pmoa03036
]
120509378 (ALMS1)
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
pmoa03037
]
120509378 (ALMS1)
Chromosome and associated proteins [BR:
pmoa03036
]
Eukaryotic type
Centrosome formation proteins
Other centrosome associated proteins
120509378 (ALMS1)
Cilium and associated proteins [BR:
pmoa03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
120509378 (ALMS1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ALMS_motif
Motif
Other DBs
NCBI-GeneID:
120509378
NCBI-ProteinID:
XP_039579872
LinkDB
All DBs
Position
Unknown
AA seq
2937 aa
AA seq
DB search
MEHGQQQQQQQDEEEEEEQRAQEPWFWLAAELGSSCSWDTKLGLSCARRELSELPTLEEG
LLSSAEASGAPASPLDIQESRFSPCLPLLLSPGLAETFLQGSQLDFLPLRGIPDVSGAFL
ECSEPPQVHGSASLRGPALPSPSQPVGQADPGAAPRAGEPLGSQGDSGDSDSGTEQGAPA
PPAQPAPEEGLAKGLEQPWGTAGKDGHCSGHSCGHSSQDSDGPAAGSELSEGNKESPGQE
ESSSSSSSSSSSGSSSYTTALTKFSERSERGVQQEKVKVLGSAAAALEKLEKGKKVPELG
WSDDFCDGLRKGRAKTSGAEGVLCAAASEAGRGGLQEPGVQPRGSRGLPAAPEELQGALL
DQQQPAGRLGTLSQPQDTAPCPGHSPEPAGSRAELTASDCSIERGHKATEISPSFSLGGE
GSFSLHLAHPNFQSTPGLLLKRAGKAEGPAGVLVIPSELQGSPCCPSEEAPGKPPAPGSP
GEQHPPQSAVEETCGRLESLRLETPSPGRVQSLPSLGLLEKLESPSPGRMQSLPSLGHQE
KGESPCPGRVKSLPSLGLQEKGESPCPVRMQSLPSLGFPEELEPPSPGRMQSLPSLGFLE
KVGAWALGQPQQGPAATSSCVPGGSPAARTACSAPPRASGCVLSGQSSPGHPEERAAPGC
RGTGSLGSVHFPSSELLPAPALSRSQSDSTVNISSSSRALPAASPAAQGTGQPPGQESPA
RGASGSCTPPQLLPAPRAEGVPSSARRSSAPGVCVPSAAQLLPKDGSCPAEEHQDCGEEG
NPSLSLSVPTGHGIVDSFGAVSLESLNFPDGPEEPQGALVVPRPCPSAGGDSPMPPGAAL
ETPKKEELNIEERIPVYLRNLGIEQSPGSILAPFVPPAPLPELEFSPWQLRSLQLDRDPP
HAQGALLPAFEMSQASFGSDVSPLSVSLAVGSEAGSEQEQELLSPLGDPPSSPGSVPGPQ
LEEAAPARGAEGCPGCSGARQDLPSCSSGSSQQGWAVGALPGVGSEVELDRASPSSGVGS
ESSQGQEGESLLGPGVLQELRELLAQVEGLTASCSRPAGPTASCREPGELPPGLAGGEQG
PKGSRLGQDWIPELHKRLSWDEAVTPRGVRGQRLGMPPLDAASCQLAWAHPLGVSSQRRE
GLRGTAQEPRPGKSAGRSEPEGCSSVTTGRDQAARAGLAQGSASSVTTGRDQAARAGLAQ
GSASSVTTGRDQAARAGLAQGSASSVTTGRDQAARAGLAQAQGSASSVTTGRDQAARAGL
AQGSASSVTTGRDQAARAGLAQAQGSASSVTTGRDQAARAGLAQGSASRVTTGRDQAARA
GLAQGSASSRLSAGTAPELGHPPPLEPLGSVPAGLGGSQGSWCQAGRAAGTRGSQDSSSG
DSLSARVRSLLGEPGRWQQPGSAPGAVQGSVPGAGAARSPAGSGSSSSSSSRDSLAARVR
RLLGSGAPGLPASRMLRSAEEQERKIRAWVKLKLASQSQERGADWDEETQLRMEAIKAEL
LPKARDPTPAKDPWLCGLEAASEHLRKQEQDLEGDQAPRCPRDRHGQLSRTREHLQPSSP
PAAPFPRAVPWDCSLLQDMLKPCSAADLQDMQLKPWGAAEIKDVQLKPCSAAEMKDVQLK
PWNTADLQDVQLKPCSAAEMKDMQLKPCSAAEMKDVQLKPWGAADLQDVQLKPWNTAEPC
SAAEMKDMQLKPCSAAELQVHRQHPAVGQPSAMAELRAPLARDPCAGSPAAAPRAHGELG
QGWGELGKRSTSISLSPQSLAGTLPGEGRLGTEPWHPALRQGCAPCPVLAGSGGAAEAPA
APAARAAAPQETAQQPGSIPTGKGQTPSARQPQLLPAAGGHRAGGLSQDTEPSIGPPPLS
PSQQQEIPPGHTQPREGSEGPGAAAQRALLRGPAEVWAEGRRGPGQPPLVPEEAVREHTG
PAHPSAADEALSTRPEAPSAPVRRFLSCVHITLCSRVGHPSASSASRAGHGAKVWDKPQG
KAQAVALQAAPGASVEGVPKSPAAEAAPEDPADPSRVPSPRQEQLQGRARAQLQAWGARG
AQGIPSSAKPGRRTSDAATQITTESPTKATLSAEICVDPQEGGGGAQQPSLPSAPGAPGI
AAPSHKEIPPFPRQPAQPLLLPYKPWGSSGMYYVPFQKAGGSVSPGEPEASTASSCSGSE
DAPAAGILAPVLGVGDEAAPARAAAQHRGTGHGHRPRLAWAEEHSTPLEQSSELPAGSRR
AEPSRAVPEPAGQSCCQHPRALPRAQRGPRAPRGTEGPFFALPAEADDSRSEEPSARACF
GHGAAGADPGPRGPAAALQDSVGKAPRQRGQARGSLDQLWVRFLQRQGTQQLRSGGELSL
VERLDRLARLLQNPIRHALAPTAAGEKAPEEEIQGREQPETGLAGKGSSGSSTEPRAARA
GRSRGSSRPGQKVIQHLSRILEEQQRLGIPSDSSSESRLSREVSSCSTCSTCSTSAWDTG
TGLDTCPASGDSSSLSLSTIDTARLLRAFGQHRLAPGTDTPSPAPGLSPGLARLYCAISQ
QKRRSEKWHGHSGGAGAGPCPQGAAPSLGKDQQSQWAAGSARGGARAGFCGSSGTDQPGL
STDNNRTEFLFPWLFLQSTIPFSSDSTCASSSSWGPSSALSHKRRTRMLSKGIQAGDLEI
VSSATRKNTRDVGVTFPTPRSSQQLWEPPGQGQGQGGAWQQPQARPGRLLTDTRSRRSRL
GTQWLVPAEGLECESRKENQCSATPGPGPAWFEPWSSTKPWREPLRERNWEEQPRLGQGA
VTPPGAGRGLGQPLGKLSLQEALALHRPDFISRSGQRLRHLRLLREERRLHSSQGERLLP
PGGEKLLPPGGDRLLPPRGDRLLPPQQLLQPAGRRKDCRTANHLVSSRGFLMREKRRAIP
KREMFQRSKRMYEQLPEVRRKREEEQRRLEYSSYRLRAQLYKTKITSRVLGKKVSWS
NT seq
8814 nt
NT seq
+upstream
nt +downstream
nt
atggagcacggccagcagcagcagcagcagcaggacgaggaggaggaggaggagcagcgg
gctcaggagccgtggttctggctggcagcagagctggggagcagctgctcctgggacacc
aagctgggcctgagctgtgccaggagggagctgtcggagctgcccacgctggaggaaggg
ctgctgtcctcagcagaggcttctggagctccagcctcacccctggatatccaggagagc
agattctccccctgcctgcccctgctgctgagcccaggcctggctgagacgttcctgcag
ggatcccagctggatttccttcccctgagaggaatcccggatgtttctggagcattcctg
gagtgttcagagcctccccaggtccatggcagcgcatccctgaggggcccagcccttccc
agtccatcccagcccgtgggacaggcggatcctggagctgccccccgggctggggagccc
ctgggcagccagggggacagtggggacagtgacagtggcactgagcagggggcaccagcc
cccccagcacagccagctcccgaggaggggctggcaaaggggctggagcagccctggggc
acagctgggaaggatggacactgctctggtcactcctgtggccactcctcccaggacagt
gatggcccagctgctggctctgagctgtcagagggcaacaaggagtccccagggcaggag
gaatcctcctcctcctcctcctcttcctcctcctcgggaagctcctcgtacacaactgca
ctgaccaaattctctgagagaagtgaaaggggggtgcagcaggagaaggtgaaggtgctg
gggagtgcagcagcagccctggagaaactggagaagggaaagaaggtgcctgagcttggc
tggtcagatgacttctgtgatggcctgaggaaaggccgtgccaaaacctcgggtgctgaa
ggtgttctctgtgcagcagcctctgaggcaggcaggggagggctgcaggagcctggggtg
cagcccaggggctcccgggggctcccagctgctcctgaggagctgcagggagctctgctg
gaccagcagcagccagcagggaggctggggacactgagccagccccaggacactgccccg
tgccctgggcattccccagagcctgcaggcagcagggctgagctgactgcctctgactgc
tccatagagaggggccacaaggccacagagatctccccttccttcagcctggggggtgag
ggctccttctccctgcacctggctcatcccaacttccagtccactccagggctgctcctc
aagagagctgggaaggcagaaggacctgctggagtcctggtgatcccttcggagcttcaa
ggctctccttgctgtcccagtgaagaagccccagggaagccccctgcccctgggtcccct
ggggagcagcaccctccccagagtgctgtggaagagacctgtgggcgtttggagtccttg
aggctggagacccccagccctggcagggtgcagtccctgccctccctggggctcctggag
aagctggaatcccccagccctggcaggatgcagtccctgccctccctggggcaccaggag
aagggagaatccccctgccctggcagggtgaagtccctgccctccctggggctccaggag
aagggagaatccccctgccccgtcaggatgcagtccctgccctccctggggttccctgag
gagctggaaccccccagccctggcaggatgcagtccctgccctccctggggttcctggag
aaggtgggagcctgggccctgggccagcctcagcagggtcctgctgccaccagctcctgt
gtgccaggtgggtctcctgctgccaggacagcctgcagcgcacctcccagggcttcaggc
tgtgttttatcaggccagagcagccctgggcaccccgaggagcgtgctgcccctggctgc
agggggacaggctccctgggcagcgtgcatttccccagcagcgagctgctgcctgcccct
gctctcagcaggtcccagtctgacagcaccgtgaacatttccagcagcagcagagccctg
cctgcagcgagcccggcagcacagggcacggggcagcccccggggcaggagagccctgct
cggggagcctctggcagctgcaccccgccacagctgctgcctgcaccccgtgctgaaggg
gtgcccagcagcgccaggcgaagctcggccccgggtgtgtgtgtgcccagtgctgctcag
ctccttccaaaggacgggagctgcccagctgaggagcaccaggactgtggggaggaggga
aatccgtccctcagcctcagtgttcccactggtcatggcatcgtggacagctttggagcc
gtttccttggagagtttgaattttcctgatgggcctgaagagcctcagggggccctggtg
gtgcccaggccctgccccagtgcaggaggggacagtcccatgccccctggagcagccctg
gagactcccaagaaggaagagctgaatattgaagaaaggatcccggtgtacctgcgcaac
ctgggcatcgagcagtccccgggctccatcctggcccccttcgtgccccccgcgcccctc
ccggagctggagttctccccctggcagctcaggagcctgcagctggacagggaccccccc
cacgctcagggggcgttgctgccagcctttgagatgtcccaggccagctttggctcggat
gtgtcccctctgagcgtgtccctcgccgtgggctccgaggctggctcggagcaggagcag
gagctgctgtcccccctcggggaccccccgtccagcccgggcagtgtgccaggcccccag
ctggaggaggctgccccagcccggggggcagaggggtgccctggctgttctggggcacgg
caggacctgcccagctgctcctcgggcagcagccagcagggatgggctgtgggggctttg
cctggggttgggagtgaggtggaattggacagggcatccccgagctccggggtgggaagt
gagagcagccagggccaggaaggggagtccctgctggggcctggggtgctgcaggagctg
cgggagctgctggcacaggtggaggggctcactgccagctgcagccgtcctgctggcccc
acagcctcctgcagggagcccggggagctgcccccggggctggctgggggggagcagggt
cccaagggttcccggctgggccaggactggatccccgagctgcacaagaggctgtcgtgg
gatgaggccgtgaccccgaggggtgtgcggggacagcggctggggatgccccctctggat
gctgccagctgccagctggcatgggcacaccctctgggggtcagctcccagcgcagggaa
gggctgaggggaacggcccaggagccgaggccagggaaatccgcggggaggtcggagcca
gaagggtgcagcagtgtgaccacgggcagggaccaggctgcccgagcggggctggcacag
ggcagtgccagcagtgtgaccacgggcagggaccaggctgcccgagcggggctggcacag
ggcagtgccagcagtgtgaccacgggcagggaccaggctgcccgtgcaggactggcacag
ggcagtgccagcagtgtgaccacgggcagggaccaggctgcccgagcagggctggcacag
gcacagggcagtgccagcagtgtgaccacgggcagggaccaggctgcccgtgcaggactg
gcacagggcagtgccagcagtgtgaccacgggcagggaccaggctgcccgagcagggctg
gcacaggcacagggcagtgccagcagtgtgaccacgggcagggaccaggctgcccgagcg
gggctggcacagggcagtgccagcagggtgaccacgggcagggaccaggctgcccgagcg
gggctggcacagggcagtgccagcagccgcctcagcgctggcacagctccagagctgggc
catcctccgcccctggagcccctgggctctgtccccgctggcctggggggctcccagggc
tcgtggtgccaggctgggagggcagcagggacccggggcagccaggacagcagcagtggg
gactccctgagtgcccgggtcaggagcctcctgggggagcctgggcgctggcagcagccg
ggcagtgccccgggggcggtgcagggcagcgtgcccggggctggcgctgcccggagcccg
gctggcagcggcagcagcagcagcagcagcagccgtgactcgctcgctgcccgtgtccgc
cgcctcctgggcagcggcgcccccgggctcccggccagccgcatgctgaggagcgccgag
gagcaggagaggaagatccgggcctgggtgaagctgaaactggccagccagtcccaggag
cgtggggcagactgggatgaagagacccagctcaggatggaggcaatcaaggcagagctg
ctcccaaaggccagggaccccacgccagccaaggatccctggctctgtggtttggaagca
gcttctgagcacctgaggaagcaggagcaggacctggagggtgaccaggctcccaggtgt
cccagggacaggcatggacagctctccaggactcgggagcatctccagcccagctcccca
ccagcagcaccatttcctagagctgttccctgggattgctccctgctgcaggacatgctg
aaaccctgcagtgctgctgacctgcaggacatgcagctgaaaccttggggtgctgctgag
attaaggatgtgcagctgaagccctgcagtgctgctgagatgaaggatgtgcagctgaag
ccctggaacactgctgacctgcaggacgtgcagctgaagccctgcagtgctgctgagatg
aaggacatgcagctgaaaccctgcagtgctgctgagatgaaggatgtgcagctgaaacct
tggggtgctgctgacctgcaggatgtgcagctgaagccctggaacactgctgagccctgc
agtgctgctgagatgaaggacatgcagctgaaaccctgcagtgctgctgagctgcaggtg
cacaggcagcacccagccgtggggcagcccagtgccatggcagagctccgtgcccctctg
gcacgggacccctgtgcagggagccctgcagctgccccccgtgcccacggggagctgggg
cagggctggggggagctgggcaagcgcagcacctccatcagcctcagcccccagagcctg
gctgggaccctgcccggggaggggaggctgggcacagagccctggcacccagctctcaga
cagggctgtgccccctgccccgtgctggctggctctgggggtgctgctgaggctcctgct
gcccctgctgccagggctgcagctcctcaggaaacagcccagcagcctggcagcatcccc
actgggaagggacagaccccgagtgccaggcagccccagctcctgcctgcagctgggggg
cacagagccggggggctcagccaggacacggagccatccattgggcccccccctctgagc
ccatcccagcagcaggagatcccccctgggcacacccagccccgggagggctcagagggc
ccaggggcagctgcacaaagggctttgctgaggggccctgctgaggtgtgggcagagggg
aggagaggccctggccagccccctctggttccagaagaggctgtgagggagcacacgggt
cctgctcacccctcagctgcagacgaggctttgtccaccaggcctgaggctccctcagcc
ccggtgaggagattcctgagctgtgtgcacatcaccctctgctccagggtcggtcacccc
agtgccagcagtgccagcagggctgggcacggggccaaggtgtgggacaagcctcaaggc
aaggctcaggctgtggctttacaagcagctccaggagcttcagtggaaggtgttcctaaa
tcccctgctgctgaggctgctccagaggatccagcagatcccagccgggtgccttccccc
aggcaggagcagctgcagggcagggccagagcccagctccaggcctggggggctcggggt
gcacagggcatccccagctctgcaaagcctggcagaaggacttctgatgctgccacccag
atcaccacggagagccctacaaaagccacgctctcagcagaaatctgtgttgatccccag
gaggggggaggtggtgcccagcagccgtcgctccccagcgcccctggagctcctgggatt
gcagctccatcccacaaggagattccccccttcccaaggcagcctgcccagcccctgctg
ctgccctacaagccctggggaagctctggcatgtattatgtgcctttccagaaagcagga
ggcagcgtgtccccaggggagcccgaggccagcacagccagctcctgctcaggctcagag
gatgctcctgctgcaggcatcctggccccagtgctgggtgtgggggatgaggctgctcca
gccagggcagctgcccagcacagggggacaggccacgggcacaggcccaggctggcctgg
gctgaggagcacagcacgcccctggaacagtcctcagagctcccagctggttcccggcgt
gcagaaccctcccgcgctgtccctgagcccgccgggcagagctgctgccagcaccccagg
gcgctccccagggcccagcggggtccccgtgccccccggggcacagaggggccgttcttt
gccctccctgcagaggctgatgacagcaggagcgaggagccgagtgccagggcgtgcttt
gggcacggagctgctggcgctgatcctgggccgcggggccccgctgctgccctgcaggac
agcgtggggaaggcaccccggcagaggggccaggccaggggcagcctggaccagctgtgg
gtgaggttcctgcagcggcagggcacgcagcagctccgcagcggcggcgagctgtccctc
gtggagcgcctggaccggctggccaggctcctgcagaatcccatcaggcacgccctggcg
cccacagcggctggcgagaaggctcctgaggaggagatccagggaagggagcagccagaa
accgggctggcaggaaaaggcagctctgggagcagcacggagccgagggcagcgcgagcg
ggacggagccgtggcagcagcaggccgggccagaaggtgatccagcacctgagcaggatc
ctggaggagcagcagcgcctggggatccccagtgacagctcctcggagagcaggctgagc
cgagaagtgtccagctgcagcacctgcagcacctgcagcacctcggcgtgggacacgggg
acggggctggacacctgccctgcctccggggacagcagctccctgtccctgtccaccatc
gacacggcccggctgctccgggccttcgggcagcacaggctggccccaggcaccgacacg
ccgagcccggccccggggctgtccccagggctggcccggctctactgtgccatcagccag
cagaagaggcgctccgagaagtggcacgggcacagtggaggagcaggggccgggccgtgt
ccccagggggctgctccgagcctcgggaaggaccagcagagccagtgggctgctggaagt
gcccggggtggagccagggctggcttttgtgggagcagtgggacagatcagcctgggctc
agcactgacaacaacagaaccgagttcctgttcccttggctgtttctgcagagcaccatc
cccttctcctcggattccacctgtgccagcagcagctcctgggggcccagctctgccctc
agccacaagcgccggacacggatgctgagcaaaggcatccaggcaggggacctggagatc
gtcagcagtgccaccaggaagaacacccgggatgtgggggtgaccttccccacgcccagg
agcagccagcagctgtgggagcccccggggcagggacagggacaggggggagcctggcag
cagccccaggcacggccgggcaggctcctgacagacacacggagcaggaggagcaggctg
gggactcagtggctcgtcccagcagagggcttggaatgcgagtcgaggaaggaaaaccag
tgcagcgccactcctggccctgggccagcctggttcgagccctggagcagcacaaagcct
tggagagagcccctgcgggagaggaactgggaggagcagcccaggctgggccagggggcc
gtgacacccccgggggctggcagggggctggggcagcccctgggcaagctctcgctgcag
gaggccctggccctgcaccgccccgatttcatctcgcgctcggggcagcgcctgcggcac
ctgcggctgctccgcgaggagaggaggctgcactcgtcccagggggagagactgctgccc
cccgggggggagaaactgctgccccccgggggggacagactgctgccaccccggggggac
agactgctgccaccccagcagctgctgcagcctgcagggaggaggaaggactgcaggact
gcaaatcacctggtgtccagccgaggtttcctgatgagagaaaaaagaagagcaattccc
aagcgtgagatgtttcaaagatctaaaaggatgtacgagcagctccccgaggtgaggagg
aagagggaggaggagcagaggaggctggagtacagctcctaccgcctgagggctcagctc
tacaaaactaagatcaccagccgtgtcctggggaagaaggtgtcctggagctga
DBGET
integrated database retrieval system
