Passer montanus (Eurasian tree sparrow): 120511496
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Entry
120511496 CDS
T07277
Symbol
PMS1
Name
(RefSeq) PMS1 protein homolog 1 isoform X1
KO
K10864
DNA mismatch repair protein PMS1
Organism
pmoa
Passer montanus (Eurasian tree sparrow)
Brite
KEGG Orthology (KO) [BR:
pmoa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmoa03400
]
120511496 (PMS1)
DNA repair and recombination proteins [BR:
pmoa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
120511496 (PMS1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_mis_repair
HMG_box
HMG_box_2
HATPase_c_3
HATPase_c
HMG_WDHD1
HMG_box_5
CHDNT
Motif
Other DBs
NCBI-GeneID:
120511496
NCBI-ProteinID:
XP_039584586
LinkDB
All DBs
Position
Unknown
AA seq
1030 aa
AA seq
DB search
MQHPPSQHLGRHRDVTRHPFPSHAAIPAPSEGQLAAFPPPSLPCRPPRRGRGAASRGRLG
RGGPGQRPGRPRERCHASRSENRELRTALWFGLNLSTMKQLPGETIRLLSSSQVITSVVS
VVKELIENSLDASATGIDIKLENYGFSKIEVRDNGSGIKIDDVPVMAVKHYTSKISSSED
LERLTTYGFRGEALGSICSISEVLVTTKTAADDFSIQYALDSNGRVTSKKPSHLGQGTTV
TVLNLFKNLPVRKQFYSTNRKCKDELKKVQDLLTAYGIIKPDLRITLTHNKAVIWQKTRV
SDHKMACMSVLGTAVMSSMVPFQHCCEYPEINLSGFLPKAESDTSLTSLSSSERSFIFIN
NRPVLQKEILKLIRQYYSQVTQKDCTRLYPIFFLSITVPASAVDVNVTPDKTQVLLHYKE
SVLLAVENVLKSLYGPLPAAVPGGSNKTDVTSEDMFVHRTDQTDVAVNEMGPSGNDELHA
HTSFLSLSSDVQNCQAGKNAEICLNHQTFSGDNVHSCLDKREVSKSDAFPDSSLNLLREE
EQNGQNVADIQSNSVPVDPESKKASEHLLSSDNIDKIDKNEEALVPRGLPEISADSWSMG
SAFKDSLGDKLEPVKILIPEVRGTTNKQNEYAGEKSSEQQSSNQSIKKKNVISEKFGRVT
AYDLINSKIIKKPKSAFEFFTHECRPKLIDDNPKTSMNDILLTIEEQWKNLNEEEKQNYE
IKATKDQERYNREVKKANAQPMHRPAKEAEKHKHKLKSSSSDQQKLDKIFQNQIEKKGKL
EQPVKIVTVPFSLSSCGRHLQRQERDVSDEHELFLIRRQSFPDVWILASEKNVKLLNPYR
LEEALLCKRLLVNHKLPVEKLDNPIVLTDSLIGGSQYMAALYKMQKNYQSFRGSGYLSDP
RLVANGFQIKVIEGASATESHLEIEGMANCLPYYGISDLKEILNAVVNRNAKEVCECRPL
KVINYLEGEAVRLARQLPLHLSKEDVQNTIYRMKQQLGKENKGCVHGRPFFHHLTDIPEV
DKHNSMEIIQ
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atgcagcacccgccgagccagcacctaggcagacaccgtgacgtgacccgccatcccttc
ccatcgcacgccgcgatcccagccccatccgaggggcagctcgccgcgtttcctccgcca
tccctcccctgccggcccccgcgccggggccgcggcgccgcttcccgcgggcggctgggc
cggggcggccctgggcagaggccgggcaggccccgggagcggtgccacgcctctcgcagc
gagaaccgggaactgcggacggctctgtggtttgggctgaatctttccaccatgaaacag
ctgcctggagagacaattcggctcctttccagttctcaggtgattacttcagttgtcagc
gtggtgaaggagctgatagaaaattccttggatgccagtgctacaggcattgatattaaa
ctggagaattacgggtttagcaaaatagaagtaagagacaatggcagtggaatcaagatt
gatgatgtcccagttatggcagttaaacactacacctcaaaaatcagctcttctgaggac
cttgaaaggctgacaacgtacggtttccgtggggaagctttgggatcaatttgcagcata
tcagaagttttggtcacaacaaagacagctgcagatgatttcagtattcagtatgctttg
gatagcaatggacgtgtaacctctaaaaagccttcccatcttgggcaaggtactacagta
acagtcctaaatttgtttaagaatcttcctgtaagaaagcagttttactcaacaaataga
aaatgtaaggatgaactgaaaaaagtccaggacctactgacagcatatggtatcataaaa
ccagacctgaggataacattaacacataataaggcagttatttggcagaagaccagggta
tcagatcacaaaatggcctgtatgtcagttctgggaacagccgttatgagcagtatggta
ccttttcaacactgctgcgaatatcctgagataaatctttctggatttctcccaaaagct
gagtcagacacatctttgacaagcctttcaagttcagaaaggagtttcatttttataaat
aatcgtccagttcttcagaaggaaatactgaagttaattcgacaatactacagtcaggtg
acacaaaaggactgtactcgtttatatcctattttctttttgagtattactgtacctgcc
tctgctgtggatgtgaatgtaacacctgataaaactcaagttttgctgcattataaggaa
tctgtcttacttgcagttgaaaatgtgttgaaatcactgtatgggccactacctgctgca
gtccctggtggaagtaataaaacagatgttacctcagaagacatgtttgttcatagaaca
gaccaaacagatgtggctgttaatgaaatgggaccatctggaaatgatgagctacatgct
catacttcattcctttcactcagcagtgatgtgcagaactgtcaagcaggaaaaaacgca
gagatctgcttaaatcatcagacgtttagtggtgataatgtacacagttgcctggacaaa
agagaggtttctaagagtgatgcctttccagacagttccttaaatttattgcgtgaggag
gaacagaatggacagaatgtggctgatattcaaagtaatagtgttcctgtggaccctgag
tctaaaaaagccagtgagcatcttttgagttctgataatattgacaaaatagataaaaat
gaggaagccttagtccctaggggcttgcctgagatctctgctgatagctggagtatggga
agtgcatttaaagacagtctgggagacaagctggaacctgttaaaatcttgattcctgaa
gttagagggacaactaataagcaaaatgaatacgctggtgaaaaaagcagtgaacaacaa
agctcaaatcaaagcataaagaaaaaaaatgtgataagtgaaaaatttggacgtgtgaca
gcttatgacttaattaatagcaaaataataaagaaaccaaagtctgcatttgaatttttc
acacatgagtgtcgtccaaaattgatagatgataatccaaagaccagcatgaatgacatc
ctgctgacaattgaagagcaatggaagaatttgaatgaagaggaaaaacagaattatgaa
ataaaagccactaaggaccaggaacggtacaacagagaggtcaagaaagccaatgcacag
ccaatgcaccgaccagcaaaggaggcagaaaaacacaaacacaagctgaagagttcttca
tctgaccagcagaaacttgacaagatatttcaaaaccagattgaaaagaaggggaaactg
gaacagcctgtgaaaattgtgacagtgcctttttctctgagttcctgtggacgtcacctt
cagaggcaagagagagatgtttcagatgaacacgagcttttcctgatccgtcgccagagt
tttcctgatgtctggatacttgcttctgaaaaaaatgtcaagttgctgaatccatataga
ctggaagaggccctgctatgtaagagattattggtgaaccataagcttccggtagagaaa
ctggacaatccaattgtgttaacagacagtcttattggtggatctcagtatatggctgct
ctttataaaatgcagaagaattaccagagtttccgtggatcaggttatttgtcagatcca
aggcttgtagcaaatggattccagataaaagtgatagaaggtgcttcggctacagaaagt
catctggaaatagaagggatggcaaattgtctgccatattatggaatttctgatttgaaa
gaaattctgaatgcagtagttaacagaaatgcaaaggaagtatgtgaatgtaggcctctc
aaagtgataaattacttggagggagaagcagtacgtttagctcggcagctgcccttacat
ttgtcaaaagaagatgtgcaaaacacaatttacaggatgaagcaacagcttggaaaggaa
aataaaggctgtgttcatggtcgtcctttttttcatcacttaacagatattccagaagtt
gacaagcacaactccatggaaattattcagtaa
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