Passer montanus (Eurasian tree sparrow): 120513108
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Entry
120513108 CDS
T07277
Symbol
PALB2
Name
(RefSeq) LOW QUALITY PROTEIN: partner and localizer of BRCA2
KO
K10897
partner and localizer of BRCA2
Organism
pmoa
Passer montanus (Eurasian tree sparrow)
Pathway
pmoa03440
Homologous recombination
pmoa03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pmoa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
120513108 (PALB2)
03460 Fanconi anemia pathway
120513108 (PALB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmoa03400
]
120513108 (PALB2)
DNA repair and recombination proteins [BR:
pmoa03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
120513108 (PALB2)
FA (Fanconi anemia) pathway
Downstream FA components
120513108 (PALB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PALB2_WD40
Motif
Other DBs
NCBI-GeneID:
120513108
NCBI-ProteinID:
XP_039588128
LinkDB
All DBs
Position
Unknown
AA seq
1314 aa
AA seq
DB search
MEAPPAAAALSGADREKLREKLALLRREYSETVIRLRRARRAERARSHGRRERSPTGGSR
GERGASGLQCADPDCSRDNTSSSADRDGPSQLQTKTCSDADTEKTSVTLKHAPEFSSDAV
SPQDSSRAESFEASQENLCCGVIRPVPVEKKPQTSRGMMKLRRRMKALESKEQESVHDVH
LISAGEMMKNQTVSAEELQSPVFRHSSISRTEEPAQRAPGAVLVQGEGNSFTPDAAPGLV
QDVFEGSVTAGEPELSPHARGDHRDISQPESSRAVATPDRPELCSQHGDSVLLDPRDDGG
EESPSRIKQPEGQSLCEDQGELHGLLDLMSENEILPDSRNDTITKESNNHEGHPSDTNTL
NPCPADRALDTAEELLENQQLETECRLSPADQAVAPEGTLGSCTVVEGLLFPVEYYVRTT
RRMASCQRKVDLDAVILSQLGRSKKGQRSKCKQKDANPNQPSQERAEGDLEPGVGPVPFL
GAENDQANSSSSQKSLPASGNSSNTSLESISQKSITSTRQEQRQSQRKQKGRRKSACKAS
MHPVSQELIESQGPTVANESSALLTHENQSEKENCDANLERSSSDERRLSGPGVPGATQP
AGPEPPPGRSQVPGKCHKALLEQFQNPPHSSDSLSPASAAASHEGGVEGSAAVCQGDKHP
VQRAKRQRGAEQLPGVSVPLRRSLRCSARHSPPTGSADDSSRGSSSPMGSQGPAALGLPD
TRGSLFSFRSLQWLVPKLGIRDFHLPNEEFGVLKLEKLKSPPVNDLEDFVSGDGVAPEDT
QDAQMKPKEKSLRSNLISPSKTGLPELPCMENLTSKKEFSTHELLFTPMGTVLAEAPTHP
EISSSVFPAVGATPGVLPSVHTEVFPDTPSVPALPATPPSPRGAAALVQGDVAHRDPAVP
LHPGSCAAGAARNQEEQGTALPSAAERGPENKSDETVSLEKHQQPENKEQESCRASPEQK
KHTAEQLTAVLPDGPREESLQFVSELKDCSCSGAVDVSAVWWAAAGGRELRVVTACESAV
SLWEPRAPGCWARLYTWHLGEIPVIQIVPLPDTCNLVCVALGELEIGEIRLLLYSSETDS
FKHSLVKTGNIKAVIGLKDWRLVSSSRTMQEQQVEMVSLSETGGSKDRQTLMPPEETVTA
FAEVEGMREALVGTTAGNSVVVWNLKTGQLLRKMHVGYSYPASICHRAYSDSGLLFVVVS
HPHAKESESCGSAAFRVVAFNPRTGRSAGAMLSCLPPGPAGRYLEGDVWDTAGAAVLTSG
AVAVWDLLRGRCMALLAPGPAGRWAXGGGAGLLAGRRDGTVHLYRYRPPQPGAA
NT seq
3945 nt
NT seq
+upstream
nt +downstream
nt
atggaggccccgccggcagcggcggccctgagcggcgccgaccgggagaagctgcgggag
aagctggcgctgctgaggcgggagtacagcgagaccgtcatccggctgcggcgggcacgg
cgagccgagcgagccaggagccacggccggcgggagaggagccccacaggtgggagccgg
ggagaacggggcgcctcaggtctgcagtgcgccgatcctgactgttctagagataacaca
tcttctagtgctgacagagatgggccctctcagttacagactaaaacctgctctgatgct
gacacagagaaaacatctgtcacacttaagcatgctccagaattctccagtgatgcggtt
agcccacaggacagctcccgggcagaaagctttgaggccagccaggaaaacctgtgctgt
ggggtcatcagacctgtccctgtggagaaaaagccccaaacctcccgaggcatgatgaag
ctgcggagacggatgaaggctctggaatcaaaggaacaggaatcagtgcatgatgtgcat
ctaatcagtgctggtgaaatgatgaaaaatcaaactgtcagtgcagaggagcttcagtca
ccagtgttcaggcacagcagcatctcacgcactgaggaacctgctcaaagggcacctggg
gcagtgcttgtgcagggagaaggaaatagtttcactcctgatgcagcaccagggcttgta
caggatgtgtttgagggcagtgtcactgcaggagagcctgagctgtccccacatgcacgg
ggggaccacagggacatctcacagcctgagtcctcaagggctgtggccacacctgacaga
cctgagctgtgttcacagcatggagactctgttttacttgaccccagagatgatgggggg
gaagaatcccccagcaggataaaacagccggagggtcagagtttgtgtgaagatcaggga
gaattacatgggctcctggatttaatgtcagaaaatgaaatattgcctgacagcagaaat
gacaccataaccaaggagagcaacaaccacgaaggacatccaagtgacactaacaccttg
aatccctgtcctgcagatagagctctggacactgctgaagagctgctggagaatcaacag
cttgaaactgagtgcaggctctctcctgctgaccaggcagtggctcctgagggcacgctg
ggctcttgcacagtggttgaggggctgctcttccccgtcgagtactacgtgcgcacaacc
cgccgcatggccagctgccagaggaaggtggacctggatgctgtaatcctcagccagctg
ggcaggagcaagaaaggtcagcggagtaaatgcaagcagaaagatgcaaaccccaatcag
ccctcgcaagagagagctgagggtgatttggagccaggggttgggcccgtcccttttctt
ggggcagaaaacgatcaagcaaactcaagtagttctcagaaatcccttcctgcctccggc
aacagcagcaacacttctcttgaatccatttctcagaaaagcatcactagcacaaggcaa
gagcagagacaatcccagaggaaacagaagggaagaagaaagtctgcgtgcaaagcctcc
atgcatccagtgtcacaagagcttatagagagtcagggtcccacagtggccaacgaaagc
agtgctctgctgacacatgaaaaccagagtgaaaaggaaaactgtgatgctaaccttgaa
aggtcatcctcagatgagaggaggctgtctgggccaggagtgcctggagctacccagcca
gcgggtcctgagcctcctccaggcaggagccaagtgccaggcaaatgccataaggctctg
ttagagcagttccaaaatccaccccacagcagcgattccctgagcccagccagtgccgct
gccagccatgagggaggtgtggaaggcagcgctgctgtgtgtcagggagataaacatcca
gtgcagcgtgcgaagaggcagcgaggggctgagcagctccccggggtcagcgtccctctg
cgccgctccctgcgctgctctgccaggcacagccccccgacaggctcagcagatgacagc
agcagaggaagcagcagtcccatgggttcacagggtcctgctgcccttgggctccctgac
actcgtggctccctcttctccttccgcagcctgcagtggctggtccctaagctgggcatc
agggacttccacttaccaaatgaggaatttggagtactgaaactggagaaattgaaatct
ccccctgtgaatgacttggaggattttgtgtctggggatggtgtggctccagaggacaca
caagatgcacaaatgaagccaaaagaaaaaagtctcagaagtaatttgatttcgccttcc
aaaactggattgcctgaactcccttgcatggaaaacctgacttccaagaaggagttttcc
acccatgagttattgttcactcccatgggaactgtcctagctgaggctcccactcaccct
gagatttcctcgtctgttttccctgctgtgggtgcaaccccaggtgttttaccttcagtg
cacactgaggtgttccctgacacaccttctgtacctgccttgccagcaaccccaccttcc
cccagaggagcagctgccctggtccagggggatgtggcacacagagaccctgctgtgcca
ctgcaccctggcagctgtgctgcaggggctgccagaaaccaggaggagcaaggtacagca
ttgccttcagcagctgaaagaggtcctgagaacaaatctgatgagactgtgtccttggag
aagcatcagcagccagagaacaaagagcaggagtcctgcagagcttcacctgaacagaaa
aaacacacagcagaacagctgactgcagtgctgccggatggccccagagaagagagcctg
cagtttgtgtcagagctaaaggactgctcgtgctcgggcgcggtggacgtgagcgccgtg
tggtgggcggcagccggcggcagggagctgcgcgtggtcactgcctgcgagagcgccgtg
tccctctgggagccacgggcacccggctgctgggcaaggctctacacctggcacctggga
gagattcctgtaatccagattgttcctctgccagacacctgtaacctcgtgtgtgtagca
ctgggagagctggagattggagaaataaggctcttgctttattcttctgagactgactca
ttcaagcactccctagtgaaaactgggaatataaaagcagttattgggctaaaggactgg
aggctggtgagcagcagcaggaccatgcaggagcagcaagtggagatggtttctctctca
gagacaggggggagcaaggacaggcagactctgatgccccctgaagaaactgttacagcc
tttgctgaagtagaagggatgagagaggccttggtgggcaccactgcagggaacagcgtt
gtggtttggaatctgaagacaggtcagctcctgaggaagatgcacgttggttattcctac
ccagcttccatctgccatcgagcatattctgactccggccttttgtttgttgttgtaagc
caccctcatgccaaagagagcgagtcctgtggaagcgcggcgttccgcgtggtggccttc
aacccgcgcacgggccggagcgcgggggcgatgctgtcctgcctcccgcccggccccgcc
ggcaggtacctggagggtgacgtgtgggacaccgcgggagccgccgtgctgacgtcgggc
gcggtggccgtgtgggacctgctgcggggccgctgcatggcgctgctggccccgggcccc
gcggggcgctgggccnncggcggcggggccgggctgctggccgggcgccgcgacggcacc
gtgcacctgtaccggtaccggcccccgcagccgggagccgcctga
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integrated database retrieval system
