Passer montanus (Eurasian tree sparrow): 120513561
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Entry
120513561 CDS
T07277
Name
(RefSeq) 3'-5' RNA helicase YTHDC2-like
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
pmoa
Passer montanus (Eurasian tree sparrow)
Brite
KEGG Orthology (KO) [BR:
pmoa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pmoa03041
]
120513561
Enzymes [BR:
pmoa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120513561
Spliceosome [BR:
pmoa03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
120513561
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
OB_NTP_bind
HA2_C
Helicase_C
DEAD
R3H
AAA_19
HA2_N
nSTAND3
Ank_2
ATPase
AAA_22
PhoH
Ank_4
NPHP3_N
AAA_23
AAA_7
Ank
AAA_16
AAA_30
ResIII
SRP54
UvrD-helicase
AAA_29
T2SSE
Sigma54_activat
Motif
Other DBs
NCBI-GeneID:
120513561
NCBI-ProteinID:
XP_039589049
LinkDB
All DBs
Position
Unknown
AA seq
1355 aa
AA seq
DB search
MEFPSSFTRTERAFVHRLCHSLGLISKSKGKGANRYLTVRKKDGSEIKRAVMTCALTPGT
KHAVCTLIRNFPVTNKERTELLPKTEQGNAYAVQSENKEVKTSGRLSDGIPQVPVKRGES
ELDSFRQSLPVFEKQEEIVKIIKDHKVVLIVGETGSGKTTQIPQFILDDCHKNGTPCRIF
CTQPRRLAALAVAERVAAERREKIGQTVGYQIRLESRVSPKTLVTFCTNGILLRTLMAGD
STLSTVTHVIVDEVHERDRFSDFLLIKLRDVLQSQANLKLIISSAALDADLFIRYFGCCP
VIHIQGRPFDVKEMFLEDILRSTGYTNKEMVKYKKEKQQEEKQQSTLTEWCSARENNTKL
EPERPRFVPRAEECSLLGDDGDTVFNQLTEKDANCLELWLIKEMDSCLSDIWLHKDIDAF
AQVFHLILTENVSVDYRHSETSATALMIASGRGFLSQVEQLISMGASIHCKSSNGWMAVD
WAKHFGQTEVVDLLESYSASAGFGNLDESSLVRTSGSDLSAEDRELLTAYHHSFDDEKVD
LDLIMHLLYNICHSCETGAILIFLPGYDEIVSLRDRILFDDKRFADNVHRYQVFMLHSNM
QTLDQKKVLKSPPPGVRKIILSTNIAETSITVNDVVFVIDSGKVKEKSFDALSCVTMLKM
VWISKASAIQRKGRAGRCQPGVCFRLFSRLRFENMLEFQTPELLRMPLQELCLHTKLLAP
INCPVVDFLMKAPDPPPALIVKNALQMLKTIDAMDPWEDLTELGYHLTELPVEPHLGKMV
LCAVVLKCLDPVLTIACALAYRDPFVLPTLASQKRAAMLCRKRFTAGTFSDHMVLLRAFQ
AWQKARSDGWERTFCEKNFLSQATMQIIVGMRTQLLGQLRASGFVRARGGADIRDVNANS
ENWAVVKAALVAGMYPNLVHVDRESLVLTAPKEKKVRFHPTSVLSQPQYKKIPPVNGQTA
AVQALPTDWLIYDEMTRAHRIANIRCCSVVTPITVALFCGPARLPSNALQASSSRQGDSD
SSDSEMEDRTTSNVSLLKLDEWLHLKLDSEAAGLLLQLRQKWHSLFLRRMRAPSKSWSQV
DEATVRAVVAVLTAEEQSAGLQQPSGIGQRPRPVASEDCLVPSTWRSTNTRRSTAEAEFS
DSSNAEKVPMRSTRPMLHQPKNYKRKNILHSKQTSDDRSDRSSVKSADSSSFPSPCASPS
SPVSGKASKSPSPRQNTPVRYFIMKSSNLQNIEISQQKGIWSTTPSNERKLNGAFGESSM
VYLIFSVQGSGHFQGFARMCSSIGCEKSQVWGSAGFGGVFKVEWIRKESIPFQFAHHLLN
PWNDNKKVQISRDGQELEPQVGEHLLQLWDHIPSE
NT seq
4068 nt
NT seq
+upstream
nt +downstream
nt
atggaatttccgtcttctttcactagaaccgaaagagcatttgttcaccggctctgtcat
tctcttggacttatatcgaagagtaaaggaaaaggagcaaatcgatacctaactgtaagg
aaaaaggatggatcagaaataaaacgtgcagtaatgacttgtgccttaactcctggtaca
aaacatgctgtttgtactttaattcgaaattttcctgttacaaataaagaacgaacagaa
cttctgccgaagacggaacaaggaaatgcatatgctgttcagtctgaaaacaaagaggtg
aagacaagtggacgacttagtgatggtatcccccaggttcctgtgaaaagaggggaatca
gagcttgattccttcaggcaatcactaccagtttttgaaaaacaggaagaaattgttaaa
ataataaaggaccataaagttgttttgattgtaggagagactggatctggaaaaactact
caaatcccccaatttattcttgatgactgtcacaaaaatggaactccctgccgtatattt
tgcactcagccaagacgtttggcagcgcttgctgtggctgaaagagtggcagcagaaaga
agagaaaagattggccagacagttggttatcagatccgattagaaagcagggtttctcca
aagacactggtaaccttttgcactaatggcatactgcttcgcacgttgatggcaggagac
agcaccctatcaaccgtgacacatgttattgtggatgaagtacatgagagggataggttc
agtgacttcttgctaataaagctgagagatgtgttgcaaagccaagctaatttaaaacta
attatttctagtgctgctctagatgcagacctctttattaggtattttggatgttgccca
gtaatacacatccaaggaagaccttttgacgttaaagagatgtttttggaggacatttta
cgaagtactgggtatacaaacaaagagatggtaaagtacaaaaaagagaagcagcaagaa
gaaaaacagcaaagcactcttactgagtggtgttctgctcgagaaaataatactaagctg
gaacctgagagaccaagatttgtcccaagggctgaagagtgtagtcttttgggtgatgat
ggtgacacagtatttaatcaactgactgaaaaagatgcgaattgccttgaactatggtta
ataaaagaaatggattcttgtctttctgacatctggttgcataaagatattgatgccttt
gctcaggtgttccatctcattttaactgaaaatgtcagtgttgattataggcacagtgaa
accagtgcgactgcactaatgattgcttcagggagaggctttttgagtcaagtagaacag
ttgatcagtatgggagcaagtatccactgcaaatcatctaatggctggatggctgtggac
tgggctaagcactttggacagacagaggttgttgacctgttggaatcctacagtgcttca
gcaggatttggaaatctggatgaaagttccctggtccgaacaagtggtagtgaccttagt
gcagaggacagagaactcttgacagcttatcatcacagttttgatgatgaaaaagtggat
cttgacctcattatgcacttactttataacatctgtcatagctgtgagaccggagcaatt
ttaatatttcttcctggatatgatgagatagttagcctgagggatcgtattctttttgat
gacaagagatttgctgacaatgtgcacagatatcaggttttcatgcttcattcaaatatg
cagactttggatcagaagaaagtgcttaaaagtccacctcctggtgtgcgcaaaataatt
ctttctacaaatatagcagaaaccagcataacagtcaatgatgttgtatttgtcattgac
tcaggcaaggtgaaagagaagtcttttgatgcactgagttgtgttacaatgctgaagatg
gtgtggatttcaaaagccagtgctatccagagaaaaggcagggctgggcggtgtcagcct
ggagtctgttttcgcctcttcagcaggctccgatttgagaatatgttggaatttcagact
ccagaacttctgagaatgccacttcaggagctttgtttacacacaaaacttctggctcca
attaattgtccagttgttgactttcttatgaaagctcctgatcctccaccagctttaatt
gtgaaaaacgctctgcaaatgctcaagactatagatgccatggacccttgggaagatctc
actgaacttggttatcatctcactgaattgccagtggagccccacctcggtaaaatggtg
ttgtgcgccgttgttttgaaatgcctggatcctgttctcaccattgcctgtgctctcgcc
taccgagacccctttgtgctgcccacgctggcctctcaaaagcgggcagccatgctgtgc
aggaagcgtttcactgcgggaaccttcagcgaccacatggtgcttctcagggcttttcag
gcgtggcagaaggcacgcagtgatggctgggagagaaccttctgtgaaaagaacttcctg
tctcaagccacaatgcaaatcatcgtaggaatgagaacacagttgcttggccagcttaga
gcctcaggttttgttagagccagaggaggagctgatattagagatgttaatgctaactct
gaaaactgggctgtagttaaagctgccttagtggctgggatgtatcccaatcttgtgcat
gtagaccgagagagcctggtcttaactgcaccaaaggagaagaaagtgcgatttcatcca
acctctgttcttagtcaacctcagtataaaaagattcctccagtgaatggtcaaactgca
gctgttcaggcactccctacagactggctgatatacgatgaaatgacgagagctcacagg
atagcaaacatcaggtgctgttctgttgtgacacccatcactgtggctctcttctgtgga
ccagctaggttaccaagtaatgctttacaggcatcttcatcccgtcaaggagacagtgat
agcagtgacagtgagatggaggacagaacaacttctaatgtgtcactgctgaagctagat
gaatggcttcacctcaaactggactctgaagctgctggtttgctgttgcaactcagacag
aagtggcatagcttatttctgcgtcgcatgcgagctccttctaaatcatggtctcaggtt
gatgaagcaactgtaagagcagttgtagctgttttaactgctgaagaacagtctgcaggt
ttgcagcagccttcaggaattggtcagagaccaagacctgtggcttctgaagattgtctt
gtaccatctacgtggaggtcaactaacaccaggagaagtacagcagaagctgagttctct
gactcctctaatgctgagaaagttcccatgaggtctacacgtcccatgcttcatcagcca
aagaattacaaacgaaaaaatattttgcactccaaacaaacttcagatgacaggtcagat
cgatcatcagtaaagtctgcagacagcagtagcttccctagcccctgtgctagtccatct
tctccagtgtctggaaaggcttccaaatcaccttcaccaagacaaaatacgccagttcgg
tactttataatgaaaagtagcaacttgcagaacattgagatttctcagcagaagggtata
tggtccactacgccaagtaacgagcgaaaactgaatggagcctttggggaaagcagcatg
gtttacttaatattttctgttcaaggctctggacacttccagggttttgctagaatgtgt
tcatcaatagggtgtgaaaagagtcaggtctggggatctgctggatttggaggtgtattt
aaggtggagtggatccgaaaagaaagcattccttttcagtttgcacatcatttgctcaac
ccttggaatgacaataagaaagtacaaataagcagagatggccaggagctggaaccacaa
gttggagagcacctgctgcagctttgggaccatattccttcggaatga
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integrated database retrieval system
