Passer montanus (Eurasian tree sparrow): 120513664
Help
Entry
120513664 CDS
T07277
Symbol
SHOC1
Name
(RefSeq) protein shortage in chiasmata 1 ortholog
KO
K28108
shortage in chiasmata 1
Organism
pmoa
Passer montanus (Eurasian tree sparrow)
Brite
KEGG Orthology (KO) [BR:
pmoa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pmoa03036
]
120513664 (SHOC1)
Chromosome and associated proteins [BR:
pmoa03036
]
Eukaryotic type
Meiosis-specific proteins
Others
120513664 (SHOC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF5587
Motif
Other DBs
NCBI-GeneID:
120513664
NCBI-ProteinID:
XP_039589220
LinkDB
All DBs
Position
Unknown
AA seq
1460 aa
AA seq
DB search
MLKTSQNKMFAALKYHSTDYLYESMARQKFSIWKLSLCFPPCLHQDEKYHFNGLFADDKY
RKPWTRIGSTQNMMAISVLDQWKKSLPVEDFLEKKPISCVEFQTSNDLIEVIPSSNPCSQ
IDTEESFLLMKSGFKEDSTQDKYFKIYYATEFKESQQDLCLEEEFVFIDNLEHFCKKLPT
LSILLSRLQFFLVKDPLLGSEGQFLTAENVFRECLTFQNGMKMEESQNELQGIEESFCTV
SVKDEEYFLLPVDLEFSKRNNGRSDCVKIPSYLQLKEMLNLAPVTVGDEDLCKQVIGEDL
KAEIAYRIEISKYCAIPQEVCSNISPSMLEFCESAEYIPYLKDEMEVPLTPPCRQQRSLV
NFLCRGLQEEPISLSGNSILIAEPSREFLESLIWQSEKYRDNMSSLLLVEHPAVSLAHQH
HSLRELQKKLPLEVEAPMLGSLEEGWWIHGGLHPAAIEILEQFSMDGSNANSLLPTEVET
FTQFTSYQIERWLEEKNSVANQELFSAGRHQSEKVVNPDLSLQIQRQNFAVSALTPAKIH
STSTSVAELTGGSISKIKTEEAIFFLNQEKKTLKPSESDSCKDVSSKLDKSSCSGKPASI
ALASKWANDDSDLNNFIMMRSKYTVTQREEKHYVDRPEKVIQSEEQYMSVLKEDDSFCET
IKTEEKNQENKDSITVNIQPSESQCQAYCLLEEAAIPVLKDLTHLGVLASVTWSFDSVKF
DHTRFFLKQQEKVICDNFKQGKIDEKEIMLFRHAALVHLLVTVRDLLLTCGLDTALGYLS
KAKEIYKNILESCLNNIWRQLKIVQYSSQKKHETNPKITALQCEMLNWMKSCGEKHSVKI
LIITRMDSEREKAAFIHPLSRIEAGLKAVDLKSEKKGNPLSCKEIISSLNRYSCIIVHNQ
QIGADFPWTHFSLVIEYDYSESSGWKNLCKNLNVTYMTFKTTLPEIIQMGNHGGSFLLEV
QIPYVFLTTEGLLNMPDILQLFESKYSITFVERSSSYSLRLFGSTDRCVVLTIDECTAIF
LQSVEELNCEDSCDTVISRLMALSLQYVCCWIIFYSRERLSLEYSLKGNTLLNLVLIYAT
LIELTQKSEDFEVKVVLTPGIEETALVIRQIADNILIASTISPPEWLDKSWLSILPSEPE
KRLLTFPCINPLVAQFMLKKGSSLNRLFLASFDQLQELLPQAPKKILKHFSDIMSSYSLN
TAAPLEKTDTSHTENQNNFNTSCLDKKQNCQILDLLDKAQSSRGTSLMNSESLIPPLNHH
KSFLKSDLPSCMQKKACSSDVITRRKLDFFAVSKDSEDFAHLEVKNSLHVQRQPFRMHDS
SDHSSKDSEKEDLFAAFSDCAPQESSKSFLNKFRDTIFKSPEIQIDQPLWNEGPLFTGPR
NSFAHDGFLSDFFDELPNLNFSQIGETSKGKRKQRPSFLWTKEKITTGSSFSEVQEFKKR
RLTYERVPGRRDGQTRLKFF
NT seq
4383 nt
NT seq
+upstream
nt +downstream
nt
atgttgaaaacgtcacaaaacaaaatgtttgcagctttgaagtatcactcaacagactat
ttatatgagagcatggcaaggcagaagttttccatctggaaattatcactttgctttcct
ccctgtttacatcaagatgaaaagtatcatttcaatggactctttgctgatgataagtat
aggaagccatggactagaattggttcaacacagaacatgatggctatttcagtattggat
caatggaagaaaagtttacctgtggaggatttcttggaaaagaaacctatctcctgtgta
gagtttcagactagtaatgacttaatagaagttattccaagttcaaatccttgctctcag
attgacacagaagaatcttttttacttatgaagagtggttttaaggaagactcaacccaa
gacaaatatttcaagatttactatgccactgaatttaaagaatcacagcaagatttatgt
ttggaagaggagtttgtttttattgataatcttgaacatttttgtaaaaaattgccaact
ttatctatacttctcagcagactacagttttttttagtgaaagatccccttttgggttct
gaaggacagtttttaacagcagagaatgttttcagagaatgtttgactttccaaaacgga
atgaagatggaagagagtcaaaatgaattgcaggggattgaagagagtttctgtactgtg
tctgtgaaagatgaagagtatttcctgttgcctgttgatttagaattcagcaaacgtaac
aatggcaggtctgattgtgttaagattccatcatacttgcagctgaaggagatgttaaat
ttagctccagtcactgtaggtgatgaagacctttgcaaacaagtgattggagaagatctc
aaagcagaaattgcatacagaatagaaatttccaagtattgtgccattccacaagaggtt
tgctccaatattagcccaagtatgttggaattctgtgagtcagctgaatatattccatat
ttgaaagatgaaatggaagtgcctttaactcctccatgcagacaacaaagatcattggtt
aattttctgtgcagaggacttcaagaagaacctatttctctctctggtaacagtattttg
attgcagagccctctagggaattcttagaatctttgatatggcaatcagagaagtatcgg
gataatatgagctctcttttgcttgtcgagcatccagctgttagccttgcacatcagcat
cattcactgagagaactgcagaaaaagctgccacttgaggttgaagcaccaatgcttggc
tcactagaggagggctggtggatccatgggggtttacatccagcagctatagaaattttg
gaacaattcagtatggatggaagtaatgcaaacagtctgcttcctacagaagtagaaaca
ttcacacaatttacatcatatcaaatagaaagatggcttgaggagaagaattctgtggca
aaccaagagctgttttctgctggaagacatcagtcagagaaagtagttaatcctgacttg
tcactgcagattcaaaggcagaactttgccgtgagtgctctgacacctgccaaaattcac
agtacaagtacatctgtggcagagcttactggaggaagcataagcaagattaagacagaa
gaggcaatttttttcttaaatcaagaaaagaaaaccctcaaaccatctgaatcagacagc
tgtaaagatgtgtcttctaaactagacaaatcatcctgtagtggaaagcctgcatcaatt
gcacttgcttctaaatgggccaatgatgattctgatctgaacaactttattatgatgaga
tctaaatatacagtcacccaaagagaggaaaaacattatgtagatagacctgaaaaagtg
atacagtctgaagagcagtatatgagtgttctcaaagaggatgattctttttgtgagact
ataaaaacagaggaaaaaaaccaagagaataaggacagtatcactgtcaatattcaacca
tcagaaagccaatgccaggcatactgcctcttggaagaagcagctattcctgtactaaaa
gatttgacacacctgggtgtacttgcttctgttacttggagctttgacagtgttaaattt
gatcatacaaggttcttcttaaaacagcaagagaaagtgatatgtgataattttaaacaa
ggtaaaatagatgagaaggagatcatgctgttcagacatgctgctctggtacacctgcta
gtgacagttcgagatctgctgctaacgtgtggcttggatacagctctaggttatttgtcc
aaggcaaaggaaatctataaaaacattttagaatcctgtttgaataatatctggaggcag
ctgaagattgtacagtacagcagccagaaaaagcatgaaacaaatcccaaaataacagca
cttcagtgtgaaatgttaaattggatgaaaagttgtggagagaaacacagtgttaagata
ctaatcattacaaggatggactctgaaagagaaaaagctgctttcattcacccgttatct
aggatagaagcaggtttgaaagctgtggatttgaaatctgagaagaaaggaaacccttta
agttgtaaagagatcataagcagtcttaatagatattcctgcattattgtacataatcag
caaattggagctgacttcccttggacgcacttctcactagtaatagaatacgattattct
gaaagttctggctggaaaaatctgtgcaaaaatctgaatgttacttacatgacttttaaa
accaccctccctgaaataatacaaatggggaatcatggtggttcctttcttctggaagta
cagattccatatgtattcctgacaactgaaggtcttcttaatatgccagatattcttcag
ctttttgaatccaagtacagcattacctttgttgaaagaagcagcagttactccttaagg
ctctttggaagtacagatcgatgtgtcgtgctgacaatagatgaatgcactgctatcttt
ctgcagagtgtcgaagaactaaattgtgaggactcctgtgacactgtaatatcaaggctg
atggcattatcactccaatatgtgtgctgttggattattttctattccagagaaagactg
agtttagagtacagtctcaagggtaatactctgcttaaccttgtcttaatttatgccact
ctaattgaacttacacagaagtcagaagactttgaagtaaaggtagttcttacaccgggg
attgaagagacagcactggtaatccgtcagattgctgacaacatcttgatagcatctact
atcagtcctcctgagtggctggacaaatcctggctttctatcttgccatctgagccagag
aaacgcctgcttacttttccatgtatcaatcctttggttgctcagtttatgctaaagaag
ggatcttcactgaacaggttatttcttgcaagctttgatcaacttcaggaacttctgcca
caggctccaaaaaaaattttaaagcatttcagtgacataatgtcttcatacagcctaaat
actgctgctcctctagaaaaaacagatacatcacacacagaaaaccagaataacttcaac
acatcgtgtcttgataaaaaacaaaattgtcagattttagatctgcttgataaggcacaa
agcagcagaggaacttctcttatgaattctgaatccctaattcctccactgaatcatcat
aagagttttttaaagtctgatcttccaagttgtatgcaaaagaaagcatgctcctcagat
gtaattacaaggagaaagctggatttctttgctgtatcaaaggactctgaagattttgct
catctagaagttaaaaattctctccatgttcaaagacagcctttcagaatgcatgatagc
tctgatcattcttccaaagactctgaaaaagaggatttatttgcagctttcagtgactgt
gcacctcaggagagctctaagagttttctaaacaaatttagagacacaatatttaaaagc
ccagaaattcagattgaccagcccctgtggaatgaggggcctttattcactggcccacgt
aattcatttgctcatgatggctttctctctgatttctttgatgagcttccaaatctgaat
tttagccaaataggtgaaacatctaaaggaaagagaaaacaaaggccttcattcttatgg
acaaaagaaaaaattacaacaggtagttctttttcagaagtacaggagttcaaaaaaagg
agattgacgtatgaaagagtccctggaagaagagatggacaaacacgtcttaaattcttt
tga
DBGET
integrated database retrieval system
