Pyruvatibacter mobilis: HG718_08050
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Entry
HG718_08050 CDS
T06559
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pmob
Pyruvatibacter mobilis
Pathway
pmob03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmob00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HG718_08050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmob03019
]
HG718_08050
03009 Ribosome biogenesis [BR:
pmob03009
]
HG718_08050
Enzymes [BR:
pmob01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HG718_08050
Messenger RNA biogenesis [BR:
pmob03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HG718_08050
Ribosome biogenesis [BR:
pmob03009
]
Prokaryotic type
rRNA processing factors
HG718_08050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DUF5351
Motif
Other DBs
NCBI-ProteinID:
QJD75361
LinkDB
All DBs
Position
1707463..1710405
Genome browser
AA seq
980 aa
AA seq
DB search
MGKKMLIDAAHREETRVAIVSGNRVENFDFESEAKRPLRGNIYLAKVTRVEPSLQAAFIE
YGGNRHGFLAFSEIHPDYYQIPVADRERLLAEEAAEAEAYDDDDVDLDDEDDDDIEAAAD
SDDDDSDDDEDDTGEAYDIGLNAFDADAEGDAEDDTDEDSEDDSENDLGDVTAEAEDASD
DATSDDEEPSGSIAASAAEAESISEAVETDADDDASDDDDSDDGDTEASAADADDDASDD
DDDSEDDAEDGDEETKADGKDRPDNRRGKGRGRGRGRSNGRGRDGRRGGGDRRPSRRSAS
RHYKIQEVIKRRQILLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITN
ASDRRRLKEAMSEMDVSEGMGLIVRTAGANRTKVEIKRDFDYLLRLWENIRDLTLKSSAP
CLIYEEGDLIKRSIRDQYTKDIDEIIVDGDQAYKDAKDFMRMLMPSHAKNVKRYKEREAL
LQRYGVQGELDSLLEPTVTLKSGGYIVINPTEALVSIDVNSGKSTKEHNIEATALSTNME
AAEEIARQLRLRDMAGLIVIDFIDMDEPRNNRAVERKLKDSLKQDRARIQVGRISSFGLL
EMSRQRMRSGVLEGSTEVCPHCKGTGMIRSTESAALQVLRAVEAEALKGRAKALDVMVPV
EIAVFILNQKRTSLLDIEKRCRVSIYLVADQGMIAPDYQIKRTDDRTPEISSDTDALSME
SAFDEDEDAALDAEAEARAAEAERRDAEREERAETSDDEAGQKPKRRRRRRRKPSGDGED
ADGNDTKADTQDGADASDEGDDASSAAETSDDGDEDGDDKPRKRRRRGRRGGRRHRRTAA
SGEGDDADGNDASADSDSEDIEDTTAGTSADDASDVSGADTDDEEAPILVAYSSNAEDPV
VVAQPAAAEETTETQADAEPEAEAETDEAAEEPEAETAESETEAEAESEPEPEPEPVLET
ADAAPESSKPAKRGWWQRRK
NT seq
2943 nt
NT seq
+upstream
nt +downstream
nt
atgggcaagaaaatgctgatcgacgcggcccaccgggaagagacccgcgtggccatcgtc
tcgggcaaccgggttgagaatttcgatttcgaatccgaagccaagcgtccgcttcgcggc
aatatctacctcgccaaagtcacccgcgtagaaccgtccctgcaggccgccttcatcgag
tatggcggcaaccggcacggcttcctcgccttcagcgaaatccatccggattactaccag
atccctgtggccgaccgtgaacggctgctggcggaggaagctgccgaagccgaggcctat
gatgatgacgatgtcgacctcgacgacgaggacgacgacgacatcgaggctgctgctgac
agtgacgacgacgacagcgacgatgatgaggacgatacgggcgaagcctatgacatcggc
ctcaatgcctttgacgctgatgccgagggcgacgctgaagacgacaccgacgaagactct
gaggacgattctgaaaacgacctgggggatgtgacggcggaggcggaagacgcgtccgac
gacgctacgtccgacgatgaagagccgtccggcagcattgccgcgtcagccgccgaggcg
gagagcatcagcgaagcggtcgagaccgacgctgatgatgatgcatcggacgatgacgac
tctgacgatggggacaccgaagccagcgcggcggatgcggatgatgatgcgtcggatgat
gacgacgactctgaagacgatgccgaggatggcgacgaagagaccaaggccgacggcaag
gaccgcccggacaatcgccgcggcaagggccgcgggcgcggccggggccgcagcaatggc
cggggccgtgacggacgccgcggtggcggtgaccgccgcccctcgcgccgcagcgccagc
cgccactacaagatccaggaagtcatcaagcgccgccagatcctgctggtgcaggtggtc
aaggaggagcgcggcaacaagggtgctgcgctgacgacctatctgtcgctggccgggcgc
tattgcgtgctgatgcccaacaccgcccgtggcggcggcatctcccgcaagatcaccaat
gccagcgaccgccgccgcctgaaggaagcgatgagcgagatggacgtgtcggaaggcatg
ggcctgatcgtccgcaccgcaggcgccaaccgcaccaaggtcgagatcaagcgcgacttc
gattacctgctgcggctgtgggagaacatccgcgacctgacgctcaagtcctcggccccc
tgcctcatctacgaggaaggcgacctgatcaagcggtcgatccgcgatcagtacacgaag
gatatcgacgagatcatcgttgacggcgaccaggcctacaaggacgccaaggacttcatg
cgcatgctcatgccgagccatgcgaagaacgtgaagcgctacaaggagcgcgaggcgctg
ctgcagcgctatggcgtgcagggcgagctggactcgctgctggagccgacggtgacgctc
aaatccggcggctatatcgtcatcaacccgacggaagcgctggtgtcgatcgacgtcaac
tccggcaagtccaccaaggaacacaacatcgaggcgacggcgctttccaccaacatggaa
gccgccgaggaaattgcccggcagctgcgcctgcgcgacatggccggtctcatcgtcatc
gatttcatcgacatggacgagccgcgcaacaaccgcgcggtggaacgcaagctgaaggac
agcctgaagcaggaccgcgcgcgcatccaggtgggtcgcatctcctccttcggcctgctg
gaaatgtcgcgccagcgcatgcggtccggcgtgctggaaggctcgacggaagtgtgtccg
cactgtaagggcacgggcatgatccgctcgacggaatccgccgccctgcaggtgctgcgc
gcggtggaagccgaagcgctgaagggccgcgccaaggcgctggacgtgatggtgccggtg
gagatcgccgtgttcattctcaaccagaagcgcacttcgctgctggatatcgagaagcgg
tgccgggtgtcgatctacctggtggcggaccaaggcatgatcgcgccggactaccagatc
aagcgcaccgatgaccggacgccggagatcagcagcgacacggacgcgctgagcatggaa
agcgctttcgacgaggacgaggacgccgcgctggacgcggaagccgaagcccgtgctgcg
gaagccgagcgccgggatgcggaacgcgaagagcgcgccgagacatcggacgacgaggcc
ggccagaagcccaagcgccgccgccgccgccgccgcaagccttctggcgacggcgaggat
gccgatggcaacgacaccaaggcggacacccaggatggcgcggatgcgtcggacgaaggt
gatgacgcttcttctgctgccgagacctccgacgacggggacgaggatggcgacgacaag
ccgcgcaagcgccgccgccggggccgccggggtggccgccgccaccgccgcactgctgcg
tccggcgagggcgatgatgccgacggcaacgacgcctctgctgacagcgacagcgaagac
atagaggacaccactgccggcacgtcggcggatgatgcttctgatgtaagcggcgctgac
acggatgacgaggaggccccgatcctggtggcctattcctccaatgctgaagatccggtg
gtggtggcccagcctgccgctgccgaggagacaaccgagacgcaggctgacgccgagccg
gaagcggaagcagaaaccgacgaggcggccgaagagcccgaggcagagacggccgagagc
gaaaccgaagctgaagctgaatccgagccggagccagagcctgagccggttcttgaaacg
gcggatgcggcaccggaatcgtcgaagcccgccaagcggggctggtggcagcggcgcaaa
tag
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