Pseudomonas monsensis: HV782_003650
Help
Entry
HV782_003650 CDS
T07539
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pmoe
Pseudomonas monsensis
Pathway
pmoe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmoe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HV782_003650 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmoe03019
]
HV782_003650 (rnr)
03016 Transfer RNA biogenesis [BR:
pmoe03016
]
HV782_003650 (rnr)
Enzymes [BR:
pmoe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HV782_003650 (rnr)
Messenger RNA biogenesis [BR:
pmoe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HV782_003650 (rnr)
Transfer RNA biogenesis [BR:
pmoe03016
]
Prokaryotic type
tRNA degradation factors
HV782_003650 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_12
RNase_II_C_S1
TRAM_2
TRAM
OB_Dis3
SRP-alpha_N
Motif
Other DBs
NCBI-ProteinID:
QXI01106
LinkDB
All DBs
Position
855955..858585
Genome browser
AA seq
876 aa
AA seq
DB search
MADWQSLDPEAAREAEKYENPIPSRELILAHLADRGSPAAREQLVEEFGLTTEDQIEALR
RRLRAMERDAQLIYTRRGTYAPVDKLDLILGRISGHRDGFGFLVPDDGSDDLFMSPAQMR
LVFDGDRALARVSGLDRRGRREGVIVEVVSRAHETIVGRYFEEGGIGFVVADNPKIQQEV
LVTPGRNANAQIGQFVEVKITHWPTPRFQPQGDVVEVVGNYMAPGMEIDVALRTYDIPHV
WPEAVLKEAAKLKPEVEEKDKEKRVDLRHLPFVTIDGEDARDFDDAVYCEAKPGKLRLFS
GGWKLYVAIADVSSYVKIGSALDNEAQVRGNSVYFPERVVPMLPEQLSNGLCSLNPHVDR
LAMVCEMTISKSGEMTDYCFYEAVIHSHARLTYNKVSAMLETPKATEARKLRGEYTDVVP
HLKQLYALYKVLLAARHVRGAIDFETQETRIIFGSERKIAEIRPTTRNDAHKLIEECMLA
ANVATAEFLKKHEIPALYRVHDGPPPERLEKLRAFLGELGLSLHKGKDGPSPKDYQALLA
SIKDRPDFHLIQTVMLRSLSQAVYSAQNEGHFGLNYEAYTHFTSPIRRYPDLLTHRAIRS
VIHSKQDTPHVRRAGAMTIPKARIYPYDEAALEQLGEQCSMSERRADEATRDVVNWLKCE
FMKDRVGESFPGVITAVTGFGLFVELTDIYVEGLVHVTALPGDYYHFDPVHHRLAGERTG
RSFRLGDTVEVRVMRVDLDERKIDFEMAEKTISAPIGRKKRGAETAAPVAKVSEEKAPAK
TASRRPAKEKAAEAYRPSDAVAKNAELRKSREMKKALLSDAKNGGKAASGGKTGRSAPDK
ATGGKPAKPSKHRKGPPKAGSAPAKSGGARKPKAKS
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atggccgattggcagtccctcgatcccgaggccgctcgtgaagcggaaaaatatgaaaac
cctattcctagccgcgaactgatcctggcgcatctcgccgatcggggttcgcctgctgcc
cgtgagcaactggtcgaagagtttggtctgaccacagaagaccagatcgaagccctgcgc
cgccgtctgcgcgccatggagcgcgatgctcaactgatctacacccgccgtggcacttac
gcgccggtcgacaagctcgacctgatcctcggccgcatcagcggtcaccgtgacggtttc
ggcttcctggtgccggacgacggcagcgacgacctgttcatgagcccggcgcaaatgcgt
ctggtgttcgatggcgaccgtgcgctggcacgtgtttccggtctcgaccgtcgtggtcgc
cgcgaaggcgtgatcgtcgaagtggtgtcccgtgcgcacgaaaccatcgtcggtcgctac
tttgaggaaggcggtatcggcttcgtcgtcgcggacaacccgaagatccagcaggaagtg
ctggtcactccgggccgcaacgccaacgcgcagatcggtcagttcgtcgaggtgaaaatc
acccactggccgacgccgcgcttccagccgcaaggcgacgtggttgaagtggtcggcaac
tacatggcgccgggcatggaaatcgatgtcgctctgcgcacttacgacatcccgcacgtc
tggcctgaagccgttctcaaagaggcggccaagctcaagccggaagtcgaagaaaaagac
aaagagaagcgcgtcgacctgcgccatctgccgttcgtcaccattgacggcgaagacgcc
cgcgacttcgacgatgctgtttattgcgaagccaaaccgggcaagctgcgcctgttctcc
ggtggctggaagttgtacgtggcgattgccgacgtttccagctacgtgaagatcggttcg
gcgctggacaacgaagcccaggtgcgcggcaactcggtgtacttccctgaacgtgtggtg
ccgatgctgcctgagcagctgtccaacggcctgtgctcgctgaacccgcacgtcgatcgt
ctggccatggtttgcgagatgaccatctccaagtccggcgaaatgaccgactactgcttc
tatgaagcggtgattcactcccacgcccgtctgacctacaacaaggtcagcgcgatgctg
gaaaccccgaaagccaccgaagcccgcaagcttcgtggcgaatacaccgacgtcgtgccg
cacctcaagcagctttatgcgctgtacaaagtgctgctggcggctcgtcacgtgcgtggc
gcgatcgatttcgaaacccaggaaacccggatcatcttcggttccgagcgcaagattgcc
gaaatccgtccgaccacccgcaacgatgcgcacaagctgatcgaagagtgcatgctggcg
gccaacgtggccactgccgagttcctcaagaagcacgaaattcctgcgctgtatcgcgtc
cacgacggcccgccaccggagcgtctggaaaaactgcgcgccttcctcggcgagctcggt
ctgtccctgcacaaaggcaaggatggcccgtcgccgaaggattatcaggccctgttggcg
agcatcaaggaccgtccggacttccatctgatccagaccgtgatgctgcgctccctgagc
caggcggtgtacagcgcccagaacgaaggtcacttcggcctgaactacgaagcctatacc
cacttcacctcgccgattcgtcgttacccggacttgctcacgcaccgcgccatccgcagc
gtgatccattccaagcaggacaccccgcacgttcgtcgtgccggcgcgatgaccatcccg
aaagcgcggatctatccttacgacgaggcggcgctggagcaactcggcgagcagtgctcg
atgagcgagcgccgtgccgacgaagcgacccgcgacgtagtgaactggctcaagtgcgag
ttcatgaaggatcgcgtgggcgaatcgttcccgggcgtgatcaccgccgtgaccggtttt
ggcctgttcgtcgaactgaccgacatttacgtcgaaggcctggtgcacgtcaccgcgctg
ccgggtgactactaccacttcgatcctgtgcatcaccgcttggcgggcgagcgcaccggt
cgtagcttccgtctcggcgataccgttgaagtgcgtgtcatgcgcgtcgacctcgacgag
cgcaagatcgacttcgagatggcggaaaaaaccatcagcgcgccgatcggtcgcaaaaaa
cgtggtgctgaaactgcagctccagtggccaaggtttcggaagaaaaggccccggctaaa
actgccagccgtcgtcctgccaaggaaaaagccgcagaagcctatcgcccgagcgacgcc
gtggcgaaaaacgccgagttgcgcaaaagccgtgaaatgaagaaagcgctgctttccgac
gccaaaaacggtggtaaagcggcgtccgggggaaagaccggacggtcggcgcctgacaag
gcgaccggcggcaagccagccaaaccgagcaaacaccgtaaaggcccgccgaaagcgggt
tctgctccagccaaaagtggcggggcacgtaaaccgaaggcgaagtcatga
DBGET
integrated database retrieval system
