Pseudomonas monsensis: HV782_027245
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Entry
HV782_027245 CDS
T07539
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pmoe
Pseudomonas monsensis
Pathway
pmoe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmoe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HV782_027245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmoe03019
]
HV782_027245
Enzymes [BR:
pmoe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HV782_027245
Messenger RNA biogenesis [BR:
pmoe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HV782_027245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QXI00183
LinkDB
All DBs
Position
6157984..6159858
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AA seq
624 aa
AA seq
DB search
MSFASLGLSEALVRAIEDAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKIYARDLKFVSACIFGGVGMN
PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRALL
AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKAGEV
RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTKQKIADGDLMGFDASTIEAEKPEVRERPDMRNPRNSRGPRGDGPNGGGGGGG
RKDKGKDKGKEKPAGERGERPARQQKPREGTPAREQRQPSQPPRAAADRAPDEFLDDDID
NFGNRVDYVPKAAPAGGRGRRPGAPAQGTGAGAPRGGQPQGRQNGPRNSNGSSTGTPPAK
RNGPRNGAPRDGQSGRRDESSSRNRRPARDDQPRTEPAVQNPRSNGPKIMHKESKADRFP
TPEQLDQLPSRPRGEKPALLTRNR
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttagtccgcgccatcgaagatgcgggc
tataccgagcctactccggtgcaacagcgggccattcccgccgtgttgcaaggtcgcgac
ctgatggttgcggcacagacaggtaccggtaaaaccggcggtttcgcccttccgatcctg
gagcggttgttccctaacggtcacccggacaaatcccagcgtcatggcccgcgccagccg
cgcgttctggtcctgacgccgacccgcgaactcgcggcccaggttcacgagagcttcaag
atctacgcccgtgacctgaaattcgtcagcgcctgcatcttcggcggcgtcggcatgaac
ccgcaggttcaggccatgtcccgtggtgtcgacgtgctcgtcgcctgcccgggtcgcctg
ctcgacctcgccggccagggcagcgtcgatctgtcccacgtcgaaatcctcgtcctcgac
gaagccgaccgcatgctcgacatgggtttcgtgcacgacgtgaagaaggtcctcgcacgt
ctgccggccaagcgtcagaacctgctgttctcggcgactttctccaaagacattaccgat
cttgccggcaagctgctgcacaacccggaacgcatcgaagtgacgccgccgaacaccacg
gtcgagcgcatcgaacaacgggtcttccgtctgccggccagccacaagcgtgcgctgctc
gcgcacctgatcactgccggcgcctgggaacaggtgctggtgttcacccgcaccaagcac
ggcgccaaccgtctggccgagtacctggacaagcacggcctgccagccgtcgcgatccac
ggcaacaagagccagaatgcccgcaccaaagccctggccgacttcaaggccggcgaagtg
cgcattctggtcgccactgacatcgctgcccgcggcctggacatcgaccagttgccacac
gtggtcaacttcgaactgccgaacgtcgatgaagactacgtgcaccgtatcggccgtact
ggccgcgccggtcgttcgggcgaggcgatctcgctggtggccccggacgaagaaaaactg
ctgaaaagcatcgaacgcatgaccaagcagaaaatcgccgatggcgacctgatgggcttc
gatgccagcaccatcgaggccgagaagcctgaagtgcgcgagcgtccggacatgcgcaac
ccgcgcaattcccgtggcccgcgtggcgacggtccgaatggcggcggcggtggcggcggt
cgcaaggacaaaggcaaggacaagggtaaggaaaaacccgctggtgaacgcggcgagcgc
cctgcccgtcagcagaagccacgtgaaggcactccggcccgcgaacagcgtcaaccgtcg
cagccgccacgcgccgccgctgatcgtgcaccggacgagttcctcgacgacgatattgat
aacttcggtaaccgcgttgattacgtgcccaaagccgccccggccggtggccgtggtcgc
cgtccaggcgctccggcacaaggcactggcgctggcgcccctcgtggcggtcagccgcag
ggtcgccagaacggtccgcgcaacagcaacggttcgagcaccggcaccccgccggccaaa
cgcaacggcccgcgcaatggcgcaccacgtgacggtcagtcgggtcgtcgtgacgagtcc
tcgtcgcgcaaccgtcgtccagcccgtgacgatcagccacgtaccgaaccagccgtgcag
aacccgcgcagcaacggtccgaagatcatgcacaaggaatcgaaagccgaccgcttcccg
acgccagagcagctcgatcaactgccaagccgcccacgtggcgagaaaccagccctgctg
acccgcaatcgctga
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