Pseudomonas mosselii: CLJ08_04930
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Entry
CLJ08_04930 CDS
T07806
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pmol
Pseudomonas mosselii
Pathway
pmol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CLJ08_04930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmol03019
]
CLJ08_04930
03009 Ribosome biogenesis [BR:
pmol03009
]
CLJ08_04930
Enzymes [BR:
pmol01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CLJ08_04930
Messenger RNA biogenesis [BR:
pmol03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CLJ08_04930
Ribosome biogenesis [BR:
pmol03009
]
Prokaryotic type
rRNA processing factors
CLJ08_04930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ATB63988
LinkDB
All DBs
Position
1001580..1004810
Genome browser
AA seq
1076 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGKITRIEPSLEAAFVDF
GSERHGFLPLKEISREYFKKAPEGRVNIKEVLSEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLTVPGDMGLIVRTAGLGRSSEEMQW
DLDYLLQLWTAIKEASQDRAAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALT
FIRQVMPQYASKVKLYEDSVPLFNRFQIESQIETAFQRVVDLPSGGSIVIDPTEALVSID
INSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERV
RECLEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCSGTGIIRDVESLSLAI
LRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDHLETPHF
EVQRLRDDNPDVLNNQSSYEIASAETEEAPQPTATRTLVRQEAAVKTAPARANAPVPTTA
EEQPAPAAPVAAPVAAEPSLFKGLVKSLVSLFAGKEEPAAAPVATTEKPATERSPRNEER
RNGRQQSRNRNGRREEDRKPREERGERAPREERQPREERAPREERAPREERQPRQPREDR
RGNREERVRELREPLDAAPTAREERAPREERAPREERVAREERTPREERAPREERAPREE
RAPREERAPREERAPREERAPREERAPREERTPREERAPREERAPREERQLRPEVQAAEQ
AVELAEEQLPNEELLQDEQEGADGERPRRRSRGQRRRSNRRERQRNANGELIDGGDEDAG
EERPQQHQATELGAELAAGTAVIAAVATSNISADAEAQANQQAERASAAVAETQVQITEV
VAEQVAIAPVVEQPVSEPVVAAEPSIEPVVEVAPQPVVEEAAAEQPAAVVEAAVEPAAVA
QAPVVEAGEIEKAPVAEAVEAQAPVAEQPAPVVEAVEAQPEAVEAPVAEPAPAVVAEEAP
VEPSTIMLPNGRAPNDPREVRRRKREAEAAAAALAAAQATPAEALETADEHKPHHG
NT seq
3231 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgattaacgcaactcagcccgaagagttgcgtgtagccctggtggac
ggccaacgtctctacgacctggacatcgagtccggcgcccgcgagcagaaaaaggccaac
atctacaaaggcaagatcacccggatcgagcccagcctcgaagcggccttcgtcgacttc
ggctccgaacgtcacggcttcctgccgctgaaggaaatctcccgcgaatacttcaagaaa
gcccctgaaggccgggtcaacatcaaggaagtcctgagcgaaggccaggaagtcatcgtc
caggtcgagaaggaagagcgcggcaacaaaggcgccgccctgaccaccttcatcagcctg
gccggccgctacctggtgctgatgcccaacaacccgcgcgccggtggcatctcccgccgc
atcgaaggcgaagagcgcaacgaactgcgcgaagcgctgaacggcctgaccgttccgggc
gacatgggcctgatcgtgcgcaccgcgggcctgggccgcagcagcgaagaaatgcagtgg
gacctcgactacctgctgcagctgtggaccgccatcaaggaagcctcgcaagaccgcgcc
gcgccgttcctgatctaccaggaaagcaacgtcatcatccgcgccatccgcgactacctg
cgccaggacatcggcgaagtgctgatcgacagcatcgacgcccaggaagaagccctgacc
ttcattcgccaggtgatgccgcagtacgccagcaaggtcaagctgtacgaagacagcgtg
ccgctgttcaaccgcttccagatcgaaagccagatcgaaaccgccttccagcgcgtggtc
gacctgccgtccggcggctcgatcgtcatcgacccgaccgaggccctggtgtccatcgac
atcaactcggcgcgcgccaccaaaggcagcgacatcgaagaaaccgccctgcagaccaac
ctggaagcggccgaagagatcgcccgccagctgcgcctgcgcgacatcggcggcctgatc
gtcatcgacttcatcgacatgaccccggccaagaaccagcgcgctgtcgaagagcgcgtg
cgtgagtgcctcgaggccgaccgcgcccgcgtgcaggtaggccgcatctcgcgcttcggc
ctgctggaaatgtcccgccagcgcctgcgtccatcgctgggcgaaagcagcggcatcgtc
tgcccgcgctgctccggcaccggcatcatccgtgacgtcgagtcgctgtcgctggcgatc
ctgcgcctgatcgaggaagaagcgctgaaggaccgcaccgccgaagtgcgcgcccaggta
ccgatcccggtggccgccttcctgctcaacgagaaacgcaactcgatcaccaagatcgaa
ctgcgcactcgagcgcgcatcatcatcctgccgaacgatcacctggaaaccccgcacttc
gaagtccagcgcctgcgcgatgacaacccggacgtgctgaacaaccagtccagctacgag
atcgcctccgccgagaccgaagaagcgccgcagccgaccgccacccgcaccctggtgcgc
caggaagccgcggtcaagaccgcgccggcccgcgccaacgccccggtgccgaccaccgct
gaagagcagccggcccctgccgcgccggtcgccgcccctgtcgccgccgagccgagcctg
ttcaaaggcctggtcaagtcgctggtcagcctgttcgccggcaaggaagagcctgccgcc
gcaccggtcgccaccaccgagaagccagccaccgaacgctcgccacgtaacgaagagcgc
cgtaacggtcgccagcagagccgcaaccgtaacggccgtcgcgaagaagaccgcaagcca
cgcgaagagcgcggcgagcgcgccccgcgtgaagagcgtcagcctcgcgaagagcgtgcc
ccgcgtgaagaacgtgcgccacgcgaagagcgtcaaccgcgccagccgcgtgaagatcgc
cgcggcaaccgcgaagagcgcgtgcgcgaactgcgcgagccactggacgccgcaccgact
gcccgcgaagaacgcgcaccgcgtgaagagcgtgcgccacgcgaagaacgcgtagcccgt
gaagagcgcaccccacgcgaagagcgtgcaccgcgtgaagaacgcgctcctcgcgaagag
cgtgcaccacgtgaagaacgcgcccctcgcgaagagcgcgcaccgcgtgaagaacgcgcc
cctcgtgaagagcgtgcaccgcgtgaagaacgcacccctcgcgaagagcgtgcaccacgt
gaggaacgcgccccacgcgaagagcgccagctgcgccctgaggtgcaggccgccgaacag
gccgtggagctcgccgaggagcaactgccgaacgaagagctgctgcaggacgagcaggaa
ggcgccgatggcgaacgtccacgtcgccgctcccgtggccagcgtcgtcgcagcaaccgt
cgtgagcgccagcgcaacgccaatggcgagctgatcgacggcggcgacgaagacgccggc
gaagagcggccacaacagcaccaggccaccgagctgggtgccgaactggccgccggcact
gccgtcatcgctgccgttgccaccagcaacatcagcgccgacgccgaggcccaagccaac
cagcaggccgaacgcgccagcgccgctgtcgccgagacccaggtgcaaatcaccgaagtc
gtggccgagcaggtcgccatcgccccggtggtcgagcagcctgtcagcgagcctgtggtc
gctgccgagccgagcatcgagcctgtcgtcgaagtggcgccacagcctgtggtcgaagaa
gccgccgccgagcagccggccgccgttgtcgaggcagctgtcgaacctgccgcggtcgcg
caagcccctgtagtggaagcgggcgagatcgagaaggcaccggttgccgaagcggtcgaa
gcgcaggcgccagtcgccgagcagcctgctccggtggtcgaagccgtcgaagcccagcct
gaagcggtcgaagccccggtggccgagcctgcgccagccgtggttgccgaagaagcgccg
gtcgagccgtccaccatcatgctgccgaacggccgtgcgccgaacgacccgcgtgaagtg
cgtcgccgcaagcgtgaagccgaagccgccgccgctgctctggccgccgcccaggctacc
ccggccgaagccctggaaaccgctgacgagcacaagcctcatcacggttga
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