Pseudomonas mosselii: CLJ08_15285
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Entry
CLJ08_15285 CDS
T07806
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pmol
Pseudomonas mosselii
Pathway
pmol03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pmol00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CLJ08_15285 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmol03021
]
CLJ08_15285 (rpoC)
03400 DNA repair and recombination proteins [BR:
pmol03400
]
CLJ08_15285 (rpoC)
Enzymes [BR:
pmol01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CLJ08_15285 (rpoC)
Transcription machinery [BR:
pmol03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CLJ08_15285 (rpoC)
DNA repair and recombination proteins [BR:
pmol03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CLJ08_15285 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
ATB65923
LinkDB
All DBs
Position
3295842..3300041
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EAALHAKIKVRINETVKERDGSIVKNTRIVDTTVGRALLFQVVPAGLPFDVVNQSMKKKA
ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIGTATDE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVVDREGKEVEQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTDQGLLMTPHIEGGDVVEPLGERVL
GRVIARDVFKPGTEDVIVPAGTLVDEQWVEFIELNSIDEVVVRSPINCETRYGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGMVRL
HNLKQVERADGNLVAVSRSGELAIADEFGRERERYKLPYGAVISVKEGEKVEAGAIVAKW
DPHTHPIVTELKGTVTFVGMEENITIKRQTDELTGLTNIEVMDVKDRPAAGKEIRPAIKM
VDANGKDLYLPGTDVPAQYFLPANALVGVADGAQIGVGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPTDGSDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEITESGDSSFIKGDQMELTQVLVENERLAAEDKFVSKFSRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRRRDADKPLR
VSASEVEAALTEALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacctactgaatttgctgaaaaaccagggtcaagtcgaagagttcgacgccatc
cgcatcggtctggcgtcgcctgaaatgatccgttcgtggtcgttcggtgaagttaagaag
ccggaaaccatcaactaccgtacgttcaagcctgagcgtgacggcctgttctgcgccaag
atctttggcccagtcaaggactacgagtgcctgtgcggcaagtacaagcgcctgaagcac
cgtggcgtgatctgcgagaagtgcggcgttgaagtcgccctggccaaggttcgtcgtgag
cgcatggcgcacatcgaactggcttcgccggttgcccacatctggttcctgaagtcgctg
ccgtcccgtatcggcctgctgatggacatgaccctgcgtgatatcgagcgcgtgctctat
ttcgagagctatgtcgttatcgatccgggcatgaccaccctcgagaagggtcagctgctc
aacgacgaacagtacttcgaagcgctggaagagttcggtgacgacttcgacgcccgcatg
ggtgccgaggctgtccgcgagctgctgcacgctatcgacctggagcacgagatcggccgc
ctgcgcgaagagattccgcagaccaactcggaaaccaagatcaagaagctgtccaagcgc
ctgaagctgatggaagctttccagggctcgggcaacctgcctgagtggatggtcctgacc
gtcctgccagtactgccgccggacctgcgtccgctggtaccgctggatggcggccgcttc
gcgacctccgacctgaacgacctgtatcgtcgggtgatcaaccgtaacaaccgtctgaag
cgcctgctcgatctgtcggcgccggacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaagcggtcgacgccctgctggacaacggccgtcgcggtcgcgccatcaccggctcgaac
aagcgtccgctgaagtccctggccgacatgatcaaaggtaagcaaggtcgcttccgtcag
aacctgctcggtaagcgcgtggactactccggtcgttcggtaattaccgtaggcccgacc
ctgcgtctgcaccagtgcggtctgccgaagaagatggccctcgagctgttcaagccgttc
attttcggcaagctggaaatgcgtggtctggcgaccaccatcaaggccgccaagaagatg
gtcgagcgcgagctgccagaggtgtgggacgttctcgccgaagtgattcgcgaacacccc
gtactgctcaaccgcgcaccgaccctgcaccgtctgggtatccaggcctttgaaccggtt
ctgatcgaaggcaaggctattcagctgcacccgctggtctgcgccgcgtacaacgccgac
ttcgacggtgaccagatggccgttcacgtgccgctgaccctggaagcccagctcgaagcg
cgcgcgctgatgatgtcgaccaacaacatcctgtcgccagccaacggtgagccgatcatc
gttccgtcgcaggacgttgtactgggtctgtactacatgacccgtgaagccatcaacgcc
aagggcgaaggtcgtgtgttcgccgacctgcaggaagtcgaccgcgtattccgcgccggc
gaagccgccctgcacgcgaaaatcaaggtccgtatcaacgagaccgtgaaagagcgcgac
ggctccatcgtcaagaacacccgtattgtcgacaccactgtcggccgtgcgctgctgttc
caggttgtgcctgccggcctgccgttcgacgtggtcaaccagtcgatgaagaaaaaggcg
atctccaagctgatcaaccagtgctaccgcgtggttggtctgaaagagaccgtgatcttc
gccgaccagctgatgtacaccggttttgcttattcgaccatttccggcgtttcgatcggc
gtcaacgacttcgtgatcccggacgagaaagcccgcatcatcggtaccgccaccgacgaa
gtgaaggagatcgagagccagtacgcctccggcctggttacacagggcgagaagtacaac
aaggtcatcgacttgtggtccaaggcgaacgacgaagtgtccaaggcgatgatggccaac
ctctcgaaagagaaggtcgtcgatcgcgagggcaaggaagtcgagcaagagtccttcaac
tcgatgtacatgatggccgactccggtgcgcgtggttccgctgcccagattcgtcagctg
gccggtatgcgtggcctgatggccaagccggacggctcgatcatcgagacgccgatcacc
gcgaacttccgtgaaggcctgagcgtactgcagtacttcatctcgacccacggtgctcgt
aagggtctggcggataccgcactgaagaccgcgaactccggttacctgactcgtcgtctg
gtagacgtggcgcaggatctggtagtgaccgagatcgactgcggcaccgaccagggcctg
ctgatgaccccgcacatcgaaggcggcgacgttgtcgagccgctgggtgagcgtgtactg
ggtcgtgtcatcgcccgcgacgtgttcaagccaggcaccgaggacgtcatcgttccggcc
ggtaccctggtggatgaacagtgggtcgagttcatcgagctgaacagcatcgacgaagtc
gtcgtgcgttcgccgatcaactgcgaaacccgctacggcatctgcgccaagtgctacggt
cgcgacctggctcgcggtcaccaggtgaacatcggtgaagctgtcggcgttatcgctgca
cagtcgatcggtgagccgggtacccagctgaccatgcgtacgttccacatcggtggtgct
gcaagccgtacctcggctgccgacagcgtccaggtgaagaacggcggtatggtgcgtctg
cacaacctgaagcaggtcgagcgtgccgacggcaacctggttgcggtatcgcgttccggc
gagctggccattgccgacgaattcggtcgtgagcgtgagcgttacaagctgccgtacggt
gcggtgatttcggtcaaggaaggtgagaaggtcgaagctggcgccatcgtcgccaagtgg
gacccgcacacccacccgatcgttaccgaactgaaaggtaccgtgaccttcgtgggcatg
gaagaaaacatcaccatcaagcgccagaccgacgaactgaccggcctgaccaacatcgaa
gtgatggacgtcaaggatcgccctgccgccggcaaggaaatccgtccggcgatcaagatg
gtcgacgccaacggcaaggacctgtacctgccaggcaccgacgtgcctgcccagtacttc
ctgccggccaacgcccttgtcggtgtggctgacggtgcccagatcggcgtcggtgacgtt
atcgcgcgtatcccgcaagaaacgtcgaagacccgtgacatcaccggtggtctgccgcgc
gttgccgacctgttcgaagcgcgccgtccgaaagaagcctcgatcctggctgaagtcagc
ggcaccatcgcgttcggtaaagagaccaagggcaagcgtcgtctggtcatcactccgacc
gacggtagcgatccgtacgaagagctgattccgaagtggcgccacctgaacgtcttcgaa
ggcgaacaggtaaaccgcggcgaagttatctccgacggcccgagcgatccgcacgacatc
ctgcgtctgctgggtgtgagcgcgctggcgaagtacatcgtcaacgagatccaggatgtt
taccgcctgcaaggcgttaagatcaacgacaagcacatcgagaccatcctgcgtcagatg
ctgcgcaaggtcgagatcaccgagtcgggcgactccagcttcatcaagggtgaccagatg
gaactgactcaggtattggtagagaacgagcgtctcgccgccgaggacaagttcgtctcc
aagttctcccgcgtgctgctgggtatcaccaaggcctcgctgtcgaccgagtcgttcatc
tccgcggcttccttccaggaaaccacccgcgtactgaccgaagcggcggtaaccggcaag
cgcgactacctgcgcggcctgaaagagaacgtggtcgtgggtcgtctgatcccggctggt
accggtctggcctaccacagcgagcgcaagcgtcgccgtgatgccgacaagccgctgcgt
gtgagcgccagtgaggtggaagccgcactgaccgaagcgctgaactccagcggtaactaa
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