Pseudomonas mosselii: CLJ08_23440
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Entry
CLJ08_23440 CDS
T07806
Name
(GenBank) helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pmol
Pseudomonas mosselii
Pathway
pmol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CLJ08_23440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmol03019
]
CLJ08_23440
03400 DNA repair and recombination proteins [BR:
pmol03400
]
CLJ08_23440
Enzymes [BR:
pmol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CLJ08_23440
Messenger RNA biogenesis [BR:
pmol03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CLJ08_23440
DNA repair and recombination proteins [BR:
pmol03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CLJ08_23440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
DEAD
Helicase_C
UvrD_C
UvrD_C_2
ResIII
Viral_helicase1
AAA_11
Peripla_BP_4
Motif
Other DBs
NCBI-ProteinID:
ATB67411
LinkDB
All DBs
Position
5059880..5065033
Genome browser
AA seq
1717 aa
AA seq
DB search
MFSFTQDKSLVVDLEVRPARSGKPEEIFKVGALRKRPDSELECDVNKDLAQVLAKVDDLA
EGADYLLGHNLIAHDLRILRQQASNMLLHGLPSIDTLRLSPLAFPRNPYHRLVKDYKLVR
DTLNSPLADCRLPLTLFNDQRQAFAQLQQTEPAELLCYQALLAPTAAADAGGLFKALTGR
ESVTLEEIGPLIAQQMKESDAQADRDLKVCRTRLDKLLAEDLHDPDMHLPLAYVLAWLRV
SGDNSVLAPWVRHQFPKVGALIRELRDVPCGRDDCQYCLTTHDPRHELRRYFNYPDFRQE
ASGKSLQHDITLAGMRGQHVLAVLATGGGKSLTYQIPALNRYHRNGSLTVIVSPLQSLMK
DQVDGLLKKGVHCAAAFNGLLNMPERADVLEKIRLGDIGILLVSPEQFRNRAFCSAIEQR
EVGGWVFDEAHCLSKWGNDFRPDYHYAVRYIAQYHGARKPAPIGCFTATAKPEVLADIRS
HFKSVLRVRFAEFLGSHERTNLTFEVMRCDRGEKASRVHRLLEEYLEEQAGAAVVFVASR
KAAEQLAEFLAHQGLSCRHFHAGMDAADKLEVQGLYKNGEIQTIVATNAFGMGVDKEDIR
LVVHADIPGSLENYLQEAGRAGRDQLPAHCVLLYDPQDIETQFGLCERACLSLRDIQQIQ
KKLNGESKRRGGGKLVITAGEILMDDSVQTSFDADAVDAETKVVTAVAWLERGGYLTREE
NHTQIFASKVDVPLEEAERALGASELTERRQAEYLAILGYLRKASPAERIDIQKLVDLTS
LEPQEVGHVLKDLEKRELLVSDTQFTVVLSYGQADASPQLLQQLLELERALLETLAEQAP
DAPGAGWQDINVTALTSVLKTRLGRTNLLPLHVLRLLRGLSPDRDAIAERRNNSFDLRQL
SHEYIKVRIQHDEGWVGLKAVSETRGIIATKLLSHLVRKLPKRGKNQLAEATFGELVGLI
EQDLELRARVADNRDRYVERVLLFLHRQEVFSLNHGMTVMRRAMTIKADPQRGRFLKDDY
QGLEEHYREKRIQVHVMREYAERWLQEPKAAYQLVDDYFTANKADFLKDYFAGRESVLKY
STSEASWRMIVEDLSDTQRGIVTDDLDSNRLVLAGPGSGKTRVIVHRIAYLLRVRRVPAS
AIVALTFNRHAANEIRKRLLALVGADAYGVSVMTYHSLAMRLTGTRFQRGDEVDETTLGN
LMQDAVRLLEGSLVVNADDEEEVTQEELDDARANLRAMLLRGYRHILVDEYQDIDELQYR
LVSALADRGSSDDAKPCIMAVGDDDQNIYAFRDTNNRYIEAFRKDYEAQEAFLVENYRSS
ACIIAAANHLIGLNGQRLKLGNPISIDARRRDDPPGGEWQALDPQRRGQVLRLTVDPADR
PFGNRQAQAALQELQRLLALENGVWQGCAVLARNHRYLLAVQAWCEHNGVPYHLASDKDS
GLPPTRQRDFVAVVDCLAQLAEPLAVDQAWQRVRTLLDEYSTAFFEAAFDELRVEFGDFQ
VKPATISRSLFDYVREMRRQAGNGLYLGTVHSAKGLEFRHVVLLDGGWVDKQETLEEERR
LYYVGMTRAEQTLTLCEFTVDNLFSGCLPSSIPRQVFAGCHDPLLDRRYQQLSLKDIYLG
HVGLHAEGDDIHARVRDLRPGAPLTLRSQGQSFLILNEWGQVVGRTAKSFTPGFSVERCE
VADIVVRYREEGNEEHWDKYPCQRWEVVVPRISGMPG
NT seq
5154 nt
NT seq
+upstream
nt +downstream
nt
atgttttcgtttacccaggataaaagtctggtcgtcgaccttgaggtcaggcccgccagg
tcgggcaagccggaggagatcttcaaggtcggtgcgctgcgcaagcgtccggacagcgag
ctcgaatgcgatgtgaacaaggacctggcccaggtgctggccaaggtcgatgaccttgcc
gaaggcgccgactacctgctgggccacaacctgatcgcccacgacctgcgcatcctgcgc
cagcaggcgtcgaacatgctgttgcacggcctgccgagcatcgacaccttgcggctgtca
ccactggcctttccgcgcaacccctaccaccggctggtgaaggactacaagctggtgcgc
gacacgctcaactcgccgctggccgattgccgcctccccctcaccttgttcaacgatcag
cgtcaggcctttgcccagctgcagcagaccgagcccgctgagttgctctgctaccaggcg
ctgctggcgcccacggcggcggcggatgccggcggcctgttcaaggccctgaccggccgg
gagtcggtgacgctggaagaaatcgggccgctgatcgcgcagcagatgaaggagagcgac
gcccaggccgatcgtgacctgaaggtgtgccgaacgcgcctggacaagctgctggccgaa
gacctgcacgatcccgacatgcacctgccactggcctatgtgctggcctggttgcgggtg
tccggggacaactcggtgctggcgccctgggtgcgacatcagttccccaaggtcggcgcg
ctgatccgcgaactgcgcgatgtgccctgtggccgcgacgattgccagtactgcctcacc
acccatgacccgcgtcatgaactcaggcgttatttcaactacccggatttccgccaggag
gcgtcgggcaagtcgctgcagcatgacatcaccctggccggcatgcgtggccagcatgtg
ctggcggtgctggccaccggtggcggcaagtcgctgacctaccagattccggcgctcaat
cgctaccaccgcaatggcagcctcacggtgatcgtctcgccgttgcaatcgctgatgaaa
gaccaggtcgacggcctgttgaaaaaaggcgtgcattgcgcggcggcgttcaacggcctg
ctcaacatgcccgagcgcgcggatgtgctggagaagattcgcctgggggacatcggcatc
ctgctggtgtcgccggagcagtttcgcaacagggctttctgcagcgccatcgagcaacgc
gaggtgggcggctgggtcttcgacgaagcccactgcctgtccaagtggggcaacgacttc
cgccccgactaccactacgccgtgcgctatatcgcgcagtaccacggtgcgcgcaaaccg
gcgcccatcggctgcttcacggccacggccaagccggaggtgctggcggatatccgcagt
cacttcaagagcgtgctgcgggtccggttcgctgagttcctcggcagccacgaacgtacc
aacctgaccttcgaagtgatgcgctgcgaccgcggcgaaaaggcgtcgcgggtgcatcgc
ctgctggaggagtacctcgaggagcaggcgggcgcggcggtggtgttcgtggccagccgc
aaggcggcggagcaactggcggagtttctggcgcaccaagggctcagttgccggcatttt
catgccgggatggatgcggcggacaagctcgaggtccagggcctctacaagaacggcgag
atccagaccatcgtcgccaccaatgccttcggcatgggggtggacaaggaggatatccgc
ctggtggtgcatgccgatattcccggctcgctggaaaactacctgcaggaggccggccgg
gcagggcgtgaccaactgccggcgcactgcgtgctgctgtatgacccgcaggacatcgag
acccagttcggcctgtgcgagcgtgcctgtctgagcctgcgggatatccagcagatccag
aagaaactcaacggcgagtcgaagcgccggggtggcggcaagctggtgatcacggcgggc
gaaatcctcatggacgacagtgtgcagacctcgttcgacgccgatgccgtggatgccgaa
accaaggtggtcacggcggtcgcctggctcgagcgtggcggctatctgacccgagaagaa
aaccacacacagatcttcgcctccaaggtggatgtgccgcttgaagaggccgagcgcgcg
ctgggcgcatcggagctgacggaacgccgccaggcggaatacctggccatcctgggctac
ctgcgcaaggccagccccgcagagcgtatcgatatccagaagctggtggacctcaccagc
ctggaaccccaggaggttggccatgtgctcaaggacctggaaaagcgcgagttgctggtg
agcgacacccagttcacggtggtgctcagctatggccaggccgatgcctcgccgcagttg
ctgcagcagctgctggagctcgagcgtgcgctgctggagaccctggccgagcaagcgccc
gacgcgccgggcgcgggatggcaggacatcaacgtgacggcgctgacctcggtgctcaag
acccgcctcgggcgcaccaacctgctgcccctgcatgtgttgcgcctgctgcgcgggctg
tcgccggatcgcgatgcgattgccgagcggcgcaacaacagtttcgacctgcgccagctc
agccacgagtacatcaaggtacgaatccagcatgacgaaggttgggtcggcctgaaggcc
gtcagtgagacgcgcggcatcatcgccacgaagctgttgagccacctggtccgcaaactg
cccaagcggggcaagaaccagttggccgaagccaccttcggtgaactggtcgggctgatc
gagcaggatctggaattgcgcgcccgggttgcggacaatcgcgacaggtatgtcgagcga
gtgctgctgttcctgcaccgccaggaggtattcagcctcaaccacggcatgaccgtgatg
cgccgggccatgaccatcaaggccgatccccagcgtggtcgcttcctcaaggacgactac
cagggcctcgaggagcattaccgcgaaaagcgtatccaggtgcatgtgatgcgcgagtat
gccgagcgctggctgcaggagccgaaggctgcctaccagctggtcgacgactacttcacg
gcgaacaaggcggatttcctcaaggactattttgccggtcgcgagtcggtgctcaagtat
tccaccagcgaggcgtcgtggcggatgattgtcgaggacctgagcgatacccagcgcggt
atcgtcaccgacgatctggacagcaacaggctggtgcttgccgggcccggttcgggcaag
acacgggtcatcgtgcaccgtatcgcctacctgttgcgggtgcgccgggtgcctgccagc
gccatcgtcgcgctgaccttcaaccgccatgccgccaacgagatccgcaaacgcctgctg
gcactggtgggggccgatgcctacggggtcagcgtgatgacctaccacagcctggccatg
cgcctgacgggtacgcgcttccagcgcggcgacgaggtggatgagaccacgctgggcaat
ctgatgcaggacgcggtgagactgcttgaaggttcgctggtggtgaacgccgatgatgaa
gaagaggtgacccaggaagaactcgacgatgcccgcgccaatctgcgcgcgatgctgctg
cgcggctaccggcatatcctggtggacgagtatcaggacatcgacgagctgcagtaccgg
ctggtcagtgccctggccgaccggggttcgtccgatgacgccaagccctgcatcatggcc
gtgggcgacgacgatcagaacatctacgcgtttcgcgataccaacaaccgctacatcgag
gcattccgcaaagactacgaggcccaggaagccttcctcgtggagaactaccgctccagt
gcctgcatcatcgcggcggccaaccacctgatcggcctcaacggccagcggctgaagctc
ggcaatcccatttcgatcgacgcgcggcgtcgggacgacccgccgggtggcgagtggcag
gccctggatcctcagcgccgtggccaggtgttgcgcctgaccgtcgatccggccgatcgg
ccgttcggcaaccgccaggcccaggccgcgctgcaggagctgcagcgtctgctggcgctc
gagaacggtgtttggcagggctgcgcggtactcgctcgtaatcaccgatacctgctggcg
gtccaggcctggtgcgagcacaacggcgtgccgtatcacctggcgtcggacaaggacagt
ggtctgccgcccacccgccagcgcgacttcgtggcggtggtcgactgcctcgcgcaactg
gccgagcccctggccgtcgatcaggcgtggcagcgggtgcggactctgctcgatgagtat
tcgacggcctttttcgaggcagccttcgacgagctgcgggtcgagttcggtgacttccag
gtgaagcctgcgacgatcagccggagcttgttcgactatgtgcgcgagatgcgacggcag
gcgggcaacggcctgtatctgggaaccgtgcattcggccaagggcctggagttccgccat
gtggtgctgttggacgggggctgggtcgacaagcaggagacactcgaagaggagcgtcgc
ctgtactacgtcggcatgacccgtgccgagcagaccctgaccttgtgcgagttcactgtg
gacaacctcttcagtgggtgcctgccctcgagcatcccgcgtcaggttttcgcgggatgt
cacgacccgctcctcgacaggcgctaccagcaactgagcctgaaggatatctatcttggt
catgtggggctccatgccgaaggtgacgatatccatgcgcgggtgcgtgacttgcgccct
ggcgcaccgctgacactgaggtctcagggtcagagcttcctgatcctcaacgagtggggg
caggtggtcgggcgaaccgccaagtccttcacgccgggcttctcggtcgagcgatgtgaa
gtggccgatatcgtcgtgcgctaccgggaggagggcaacgaggagcactgggacaagtac
ccctgccagcgttgggaagtcgtggtgccgcgtatcagtggcatgcctggttag
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