Pseudomonas monteilii SB3078: X969_18840
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Entry
X969_18840 CDS
T02972
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pmon
Pseudomonas monteilii SB3078
Pathway
pmon03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmon00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
X969_18840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmon03019
]
X969_18840
03400 DNA repair and recombination proteins [BR:
pmon03400
]
X969_18840
Enzymes [BR:
pmon01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
X969_18840
Messenger RNA biogenesis [BR:
pmon03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
X969_18840
DNA repair and recombination proteins [BR:
pmon03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
X969_18840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
Sigma70_r4_2
HTH_23
HTH_40
GerE
HTH_29
ResIII
Glyco_hydro_57
Motif
Other DBs
NCBI-ProteinID:
AHC83914
LinkDB
All DBs
Position
complement(3959623..3961770)
Genome browser
AA seq
715 aa
AA seq
DB search
MLEQAQRVLKDVFGYDSFRGRQAAIIDCVANGGDALVLMPTGGGKSLCFQVPGLLRPGLT
VVVSPLIALMDDQVATLDELGVPAAALNSTLTPEQQRDLAGRLRRGEVKMLYLAPERLVQ
PRMLDFLRDLDISLFAIDEAHCVSQWGHDFRPEYLQLGQLAELFPHVPRIALTATADMRT
REEIVQRLHLQGAERFLSSFDRPNIFYRIVPKEAPRKQLMAFLGERRGNAGIVYCLSRKK
VDETAAFLCDQGFPALPYHAGLAAETRAANQHRFLNEEGLIMVATIAFGMGIDKPNVRFV
AHLDLPKSLEAYYQETGRAGRDGLPSDAWMAYGLQDMVMLKQMLQNSEGDERHKRIEQHK
LDAMLALCEETRCRRQSLLAYFDETLEQPCGHCDNCVDQVQTWDATEPARQALSAVFRTG
QRYGVGHLVDVLLGKDTEKVRNFGHEKLSVFGVGKGLAEVEWRSLFRQLVARGLVDIDLE
GYGGLRLSDSCRPLLRGEVTLQLRRDLKPQTTARTSSSSGGSPASQLVRAEERELWEALR
TLRRKLAEEHSVPPYVIFPDSTLLEMLRSQPVSLSDMAQVSGVGARKLERYGQAFLEVLN
NSGGTDEAPKVVLDLRHELVSLARAGMTPAQIAGQLNCSEKNVYSLLAEALGRQELSLEQ
ALDLPQDLLMEVQDAFLDGEGELPPVSAIAPLFGGRVPEGVLYCVRAALAAEFEL
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaacaggctcagcgcgttctcaaggacgtctttggctacgacagtttccgcggg
cgccaggcagcgatcatcgactgcgtggccaatggcggtgatgccctggtgctgatgccc
accggcggcggcaagtcgttgtgtttccaggtaccggggctgctgcgtccgggcctgaca
gtggtggtctcgccgctgatcgcgctgatggatgaccaggtcgccacgctcgacgaactg
ggtgtgccggccgccgcgctgaactccacgctgaccccggagcagcagcgtgacctggcc
gggcgcctgcgccgtggcgaagtgaagatgctgtacctggcgccggaacgcctggtgcag
ccgcgcatgctcgacttcctgcgcgacctggatatctcgctgttcgccatcgacgaggcc
cactgcgtgtcgcaatggggccacgatttccgccccgaatacctgcaactgggccagttg
gccgagctgttcccgcatgtgccgcgcatagcgctgaccgccaccgccgacatgcgcacc
cgtgaagagatcgtccagcgcctgcacctgcaaggcgccgaacgcttcctgtcgagtttc
gaccggcccaacatcttctaccgcatcgtgcccaaggaggcgccgcgcaagcagctgatg
gctttcctcggcgagcgccgcggcaacgccggtatcgtttattgcctgtcacgcaagaag
gtcgacgaaaccgctgccttcctctgtgaccagggcttcccggcgctgccgtatcatgcc
ggcctggcagccgagacgcgcgcggccaaccagcaccgtttcctcaacgaggaagggctg
atcatggtcgccaccattgccttcggcatgggcatcgacaagccgaacgtgcgttttgtt
gcccaccttgacctgcccaagtcgctcgaggcgtactaccaggagaccggccgtgccggc
cgtgacgggctgccgtccgatgcctggatggcctacgggctgcaggacatggtcatgctc
aagcagatgctgcagaactccgaaggtgacgagcgccacaagcgcatcgagcagcacaag
ctcgacgccatgctggccctgtgcgaagaaacccgctgccgccgccagtcactgctggcc
tatttcgacgaaaccctcgagcaaccgtgcgggcactgtgacaactgtgtcgaccaggtg
cagacctgggatgccaccgagcctgcccgtcaggcgctgtcggcggtgttccgcaccggc
cagcgctacggcgtcgggcacctggtcgacgtgctgctgggcaaggacaccgaaaaggtg
cgcaatttcggccacgaaaaactctcggtttttggcgtcggcaaggggctggccgaggtc
gagtggcgttcgctgttccgtcagctggtggcgcgcggcctggtcgatatcgacctggaa
ggctacggtggcctgcgcctgtccgacagctgccggccgctgctgcggggcgaggtgacc
ttgcagctgcgccgtgacctcaagccgcagaccaccgccaggacctcgtcgtccagtggc
ggcagcccggccagccagctggtgcgtgccgaagagcgcgagctgtgggaagcactgcgt
accctgcggcgcaagctggccgaggagcacagcgtgccgccctatgtcatcttccccgac
tcgacgctgctggagatgctgcgtagccagccggtcagcctcagcgacatggcccaggtc
agcggcgtgggcgcgcgcaagctggagcgttatggccaggccttcctcgaggtgctgaac
aatagcggtggcactgacgaagcaccgaaagtagtgctcgacctgcgccacgaactggtc
agcctggcacgcgccggcatgaccccggcgcagatcgccggccagctcaactgcagcgag
aagaacgtctacagcctgctggccgaggcgctggggcgccaggaactgagcctggaacag
gccctggacctcccgcaagacctgttgatggaagtgcaggatgccttcctcgatggcgag
ggcgagctgccaccggtgtctgcgattgcgccgctgttcgggggacgggtgccggagggc
gtgctgtactgcgtgcgggctgcgctggcggccgagttcgagctgtaa
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