Pseudomonas monteilii SB3078: X969_19290
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Entry
X969_19290 CDS
T02972
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
pmon
Pseudomonas monteilii SB3078
Brite
KEGG Orthology (KO) [BR:
pmon00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pmon03016
]
X969_19290
Enzymes [BR:
pmon01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
X969_19290
Transfer RNA biogenesis [BR:
pmon03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
X969_19290
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
AHC84003
LinkDB
All DBs
Position
complement(4080447..4081580)
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AA seq
377 aa
AA seq
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MAIEIHWIRDDQSLAEHCRDWHQLPFVAVDTEFMRVDTFYPKAGLIQIGDGQRAFLIDPL
LIGNWQPLAELLDDSGVVKVLHACSEDLEVLLRLTGKLPQPLFDTQLAAGYLNLGFSMGY
SRLVQDVLGIDLPKGETRSDWLQRPLSETQVSYAAEDAVHLAELFTVLRPRLSDDKYAWV
LEDGAELVAALRREVEPESLYRDVKLAWKLAPQQLAVLRELCAWREREARNRDVPRNRIL
KEHSLWPMAKSQPSNLSALAKIDEMHPRTIRQDGEFLIQLIKRAASLPAEQWPQALPEPL
PIEAAGILKQLRAIGQAEGERLGIAPELMLRKKALEALLKSGYPNGPYQLPDSLRGWRRE
RMGQALLDSLAGAGETR
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
gtggccatcgaaatacactggatccgtgacgaccagagcctggccgaacactgccgcgac
tggcatcagctgccctttgtcgccgtcgacaccgaattcatgcgggtcgacaccttctac
ccgaaagccgggcttatccagatcggcgatggccagcgtgccttcctgatcgatccgttg
ctgatcggcaactggcaacccctggccgaactgctggatgacagcggtgtggtcaaggtg
ctgcacgcctgcagcgaagacctcgaagtgctgctgcgcctgaccggcaagctgccacag
ccgctgttcgacacccaactggcggccggttatctgaacctggggttctccatgggttat
tcgcgcctggtgcaggatgtgctgggtatcgacctgcccaagggcgaaacccgctccgac
tggctgcagcgcccgctctcggaaacccaggtcagctatgccgccgaggatgccgtgcac
ttggccgagctgttcaccgtgttgcgcccgcgcctgagtgacgacaagtacgcctgggtg
ctggaggacggcgccgagctggtggctgcattgcgccgcgaagtcgagcccgaaagcctg
taccgcgacgtcaagctggcctggaagctggccccccagcaactggcagtgctgcgtgag
ctgtgtgcctggcgcgagcgtgaagcgcgcaaccgcgacgtaccgcgcaatcgcatcctc
aaggagcactcgctgtggccaatggccaagagccagccgagcaacctgtcggcgctggcc
aagatcgacgagatgcatccgcgcaccattcgtcaggacggtgagttcctcatccagctg
atcaagcgtgccgccagcctgccagccgagcaatggccacaggccttgcccgagcctttg
ccgatcgaggccgcaggtatcctcaagcagctgcgtgccatcggccaggccgaaggtgag
cgcctgggcattgcccccgagctgatgctgcgcaaaaaagccctggaagcgctgctcaag
agcggctaccccaatggcccctatcaattgcccgattcgctgcgcggctggcgccgtgag
cgcatgggccaggccctgctggacagcctcgcaggcgccggagagacccgatga
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