Penaeus monodon (black tiger shrimp): 119569243
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Entry
119569243 CDS
T08784
Name
(RefSeq) pre-mRNA-processing factor 19-like
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
pmoo
Penaeus monodon (black tiger shrimp)
Pathway
pmoo03040
Spliceosome
pmoo04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pmoo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119569243
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
119569243
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pmoo03041
]
119569243
04121 Ubiquitin system [BR:
pmoo04121
]
119569243
03400 DNA repair and recombination proteins [BR:
pmoo03400
]
119569243
Enzymes [BR:
pmoo01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
119569243
Spliceosome [BR:
pmoo03041
]
Complex B
Other components
Prp19 complex
119569243
Complex C
Prp19-CDC5 complex
119569243
Ubiquitin system [BR:
pmoo04121
]
Ubiquitin ligases (E3)
U-box type E3
119569243
DNA repair and recombination proteins [BR:
pmoo03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
119569243
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
Prp19
Beta-prop_EML_2
WD40_CDC20-Fz
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_EML
ANAPC4_WD40
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
Beta-prop_SCAP
NBCH_WD40
Beta-prop_WDR19_1st
Beta-prop_HPS5
Beta-prop_Vps41
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_EIPR1
Beta-prop_SPT8
U-box
Beta-prop_IFT122_1st
PEP5_VPS11_N
Beta-prop_DCAF4
Beta-prop_Nup120_160
eIF2A
Beta-prop_WDR35_TULP_N
Ge1_WD40
WD40_like
PROPPIN
ATG16
Cytochrom_D1
PUMA_CC
DUF7099
Motif
Other DBs
NCBI-GeneID:
119569243
NCBI-ProteinID:
XP_037773420
LinkDB
All DBs
Position
4:complement(5636931..5669415)
Genome browser
AA seq
505 aa
AA seq
DB search
MSLICAISNEVPDQPVVSPLSGAVFERRLLEKYIAENGTDPINNKELRVEQLIDLKVPTV
AKPKPPSATSIPAILKALQDEWDAVMLHSFTLRQQLQTARQELSHALYQHDAATRVIARL
NKEVTAAREALATLKPQAGIAPATPAGPTIAATAEAGGAADVPGEGAGLTEDVVARLQDT
ATVLTQERKRRGRTIPEGLTPSEQIRSFNTLASHPGLHSASVPGILALDVHQKDTSKIVT
GGSDKNATVFNKDTEQVVAILKGHSKKVSCVVYHPTEDTVITASPDTQIRVWNVGTAQTL
QLIRAHDGPVTGLSLHAIGDYLLSASRDHNWAFSDIRTGRVLCKVSDTSASSPLTAAQFH
PDGLILGTGTQDATIKIWDLKERSNVANFPGHSGAISSIAFSENGYYLATSAEDSTVRLW
DLRKLKNFKTIQLDEGYEVMDLCFDQSGTYLAVAGTDVRVYLCKQWTDLRVFNDHTAMAT
GIRFGSNASYLASTSMDRTLKIYGP
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgtctctcatatgcgcaataagtaatgaggtgccagaccagccagtggtgtccccactt
tcaggtgctgtctttgagcgccggcttctggagaagtacattgcagaaaatggaacagac
cccatcaataacaaggaactcagagttgaacagcttattgatttaaaagttccaacagtt
gcaaaaccaaaacctccaagtgcaactagtattcctgcaatcctcaaagccttgcaggat
gagtgggatgctgttatgcttcactcctttactctgcgtcaacagctccagactgctcgc
caagaactcagtcatgcactgtaccagcatgatgctgctactcgtgtcattgcccgtctg
aacaaggaagtaacagctgctcgtgaggccttggcaacactaaagccacaggctggtatt
gcacctgctacgccagctggaccaactattgctgcaacagcagaggcaggaggtgcagca
gatgtcccaggagagggtgcagggttgactgaggatgttgtagcacgcctgcaggacacg
gccacagttcttacacaagagcgaaagagacgcggccgaacaattccagaggggcttaca
ccatcggaacagatcaggagcttcaatacacttgcatcacatcctggtttgcatagtgct
tcagtaccaggtatcttggccttggatgtgcatcagaaggacaccagcaaaattgtcact
ggtggaagtgacaagaatgcaacagtgtttaacaaggatacagagcaggtggttgctatc
ttaaagggtcatagcaagaaggtatcctgtgtggtttatcaccccacagaggatacagtt
atcacagcttctccagatacacagatccgtgtttggaacgtgggaactgctcaaacgctg
caactgatccgagctcatgatggtcccgtcactggcttgtctcttcatgctataggagat
taccttctgtcagcttcccgtgaccacaactgggccttctcagacatcaggacaggacga
gtgctttgtaaagtaagcgacacatccgctagctcccctctgacagctgcccagttccac
cctgatggtctcattcttggaacgggaactcaagatgccaccatcaagatctgggacttg
aaagagcgctctaatgtggccaactttccaggtcacagtggcgctattagttctattgcc
ttcagtgagaatggttattacttggcaacttcagcagaggactctactgtgagactctgg
gatttgcgtaagctcaagaacttcaagacaatacagcttgatgaaggttatgaagtgatg
gacctatgcttcgatcagtctggcacatacttagctgttgcaggaactgatgttagagta
tacctatgtaagcaatggacagacttgcgagtcttcaacgatcacactgccatggctact
ggtattcgcttcggctcaaatgctagttatcttgcatctacatcaatggacagaaccctg
aagatctatgggccatga
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