Penaeus monodon (black tiger shrimp): 119571196
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Entry
119571196 CDS
T08784
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16-like
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
pmoo
Penaeus monodon (black tiger shrimp)
Pathway
pmoo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmoo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119571196
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pmoo03041
]
119571196
Enzymes [BR:
pmoo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119571196
Spliceosome [BR:
pmoo03041
]
Complex C
Other components
Step II factors
119571196
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
Flavi_DEAD
T2SSE
AAA_30
ABC_tran
AAA_7
AAA_16
SRP54
Sigma54_activat
Sigma54_activ_2
ResIII
Motif
Other DBs
NCBI-GeneID:
119571196
NCBI-ProteinID:
XP_037774542
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All DBs
Position
4:complement(26854501..26862265)
Genome browser
AA seq
1263 aa
AA seq
DB search
MSHILEGSSGGVGGLIVRKVKKEEDNDSVFKKPGAPVRGSILGLDKLAALKRKIREDNDK
ESSRRKVKRDSSSDSDDGSDSDEEHGKESRKEDKGKQREYRSRYDETPTYTGGVNREVRD
RLTEKQKKHKDRYVSASSKDRKERDNDRDRDRDDRDKYRDSRKREFDRDRRDSYYRDGRR
ERYGDKSERYGDRSERYGDRSERYYKDRSKRGDRSERRGDYGNGSERSGYSERSGMGDWS
ERSNRTPRFSDAPETPRIPGVKDTPSHSSWDDEDNSITPSKTSSWDLPTPSSQHRSRDND
WSFRSGSHSMRERNSPSRKDFHDSDKTPLPTPSYKYNSWMSDRDGKVNREFDDEEERERW
EEEEKRLDRQWYDMDQGYDDTNNPFADVSQEYERKKNEKLEKNKKKMSAKQRQIHKDNEL
WETNRMLTSGVVQKIDYDEDFEEEFTNRVHILVHNIVPPFLDGRIVFTKQPEPVIPVKDS
TSDMAQVSRKGSAAVKSRREQRERRKAAKKEWELAGTQLGNLIGVKKEDERDDRKIEEGE
TDYKADQKFAEHMKNSNEASSDFAKKKSIKEQRQFLPVFAVREELLRIIRENSVVIIVGE
TGSGKTTQLTQYLHEDGYSTLGMIGCTQPRRVAAMSVAKRVSDEMGTHLGEEVGYAIRFE
DCTSEKTIIKYMTDGILLRESLRESDLDNYSAIIMDEAHERSLSTDVLFGLLREVVARRH
DLKLIVTSATMDSQKFATFFGEVPVFTIPGRTFPVEVFFSRNVVEDYVEAAVKQALQIHL
QAEEGDILVFMPGQEDIEVTCELIVEKLDEIDNAPQLAVLPIYSQLPSDLQAKIFQRAPD
GLRKCVVATNIAETSLTVDGIKYVVDSGYCKLKVFNPRVGMDGLQVYPVSQANANQRMGR
AGRTGPGMCYRLYTERQYKDELLATTVPEIQRTNLANVVLLLKSLGVEDLLKFHFMDPPP
QDNLLNSQYQLWTLGALDNTGMLTKLGRAMVEFPLDPALSKMLLAGVEMHCSEEILTIVS
MLSVPALFYRPKGREEEADAMREKFQVPESDHLTYLNIYRQWRLQKYSMNWCNKHFLHFK
ALKKVREVRQQLHDIMEQQKLKVISCGMDEDLVRKCICAAYFHQACRLKGIGEYVNLRTG
TPCHLHPTSALFGMGYTPDYIVYHELVMTSKEYMQCVTAVEGGWLAEVGGKFYSINEGGA
SRMEKRRQALAHKAAMEAEMDRAQDTLKARAEEKQRREESSRRQQVYDVGTPRRVQTSAR
FGI
NT seq
3792 nt
NT seq
+upstream
nt +downstream
nt
atgtcacacatcctggaaggttcctcgggaggtgttggaggcctcatcgtaaggaaggtg
aagaaggaagaagataatgactcggtgttcaaaaagccaggtgctcctgtcaggggctcg
atccttggcctggacaaactggctgccctgaagaggaagatccgagaggataatgacaag
gagagtagccggaggaaggtgaagagggattcatccagtgacagtgatgatggcagtgac
agcgatgaggagcatggaaaggagtcaagaaaagaggacaagggaaagcaaagggagtac
aggtcgaggtatgatgagacaccgacatacactgggggtgtcaaccgtgaagttagagac
cgactcacggaaaaacagaaaaagcacaaagacaggtatgtcagtgcatcatccaaagac
agaaaagaaagagataacgacagagatagagacagagatgaccgggataaatatagggac
agtagaaaaagagaatttgatagagatagaagagacagttattacagagatggaagaagg
gaaagatatggtgataaaagtgaaagatatggtgatagaagtgaaagatatggtgataga
agtgaaagatattacaaagatcgaagtaagcgaggagacaggagtgagagaagaggagat
tatggaaatggttcagaaagatcaggttattctgagagatcaggaatgggtgactggtct
gagaggtccaataggacaccaaggttctctgatgccccagaaacaccaaggattccaggt
gtgaaagatacaccttcccattcttcatgggatgatgaagataactccattactccttca
aagacctcttcctgggaccttcctactccctcttcccaacatcgatccagagacaatgac
tggtctttccgcagtggaagccactcgatgcgagagagaaattcccccagcaggaaggac
ttccatgacagtgataagactccacttccaacaccatcatacaagtacaattcttggatg
agtgacagagatgggaaggtgaacagagaatttgatgatgaagaagagagagagagatgg
gaagaagaagagaaacgattagatagacagtggtatgacatggatcaaggttatgatgac
acaaataacccatttgctgatgtatcccaggaatatgagaggaagaaaaatgagaaactg
gaaaagaacaagaaaaagatgagtgcaaagcagaggcaaattcataaggataatgaattg
tgggagacaaacaggatgttgaccagtggtgttgtacaaaagatagattatgatgaggat
ttcgaggaggaatttaccaacagggtccatattttggtgcacaacattgtgcccccattc
ttggatggacgtatagttttcactaagcaaccagagcctgtgattccagttaaagattct
acatcagatatggcacaggtgtccaggaaaggttctgctgctgtcaagagcaggagagag
caacgcgaacgtcggaaagctgctaaaaaagaatgggaacttgcgggtacacagctggga
aatcttattggtgtcaaaaaagaagatgaaagagatgacagaaagattgaagaaggagaa
actgattacaaagctgatcagaaatttgcagaacacatgaaaaactcaaatgaagcatct
agtgactttgccaaaaagaagtccatcaaagagcagcgacagtttctcccagtctttgca
gtaagggaagaactactccgaattattagagagaactcagttgttatcattgttggtgaa
acaggaagtgggaagacgactcagttgactcaataccttcatgaggatggttacagtaca
cttggcatgattggatgtacacagccaaggcgtgtggctgcaatgtcagtagccaagcga
gtgtctgatgaaatgggtacacaccttggagaagaagttggttatgccattcgttttgaa
gattgtacaagtgaaaagacaatcataaaatacatgactgatggaattttgctcagagag
tcattgcgtgagagtgatttagataattacagtgcaattattatggatgaggctcatgaa
cgttctctaagcacagatgtattgtttggtttgttgcgtgaagttgtggctcgtagacat
gatttgaagttgattgttacatctgcaactatggattcacaaaaatttgccacattcttt
ggtgaagtaccagtgtttaccattcctggcagaacatttcctgttgaggtatttttttca
cgtaatgttgttgaggattatgtagaagcagcagtgaaacaagctcttcaaattcatctt
caagcagaggaaggagatatcttggtgtttatgccaggacaggaagatattgaggtcacc
tgtgaacttattgtggagaaattagatgaaattgataatgccccccagttagctgttctt
cccatctattctcagcttccttcagatctccaagcaaagattttccaacgtgcacctgat
ggtctgcgcaaatgtgttgtggctacaaacattgctgaaacatctcttactgttgatggt
attaaatatgttgttgattcaggttactgcaagctgaaggtttttaatccaagggtaggt
atggatggccttcaggtttatccagtgtcacaagccaatgccaaccagagaatgggcaga
gcagggcgcactggtcctggtatgtgctatcgtttgtacacagaacgacagtataaagat
gaactgttggcaactactgttccagagatccagcgtactaatctggcaaatgtggtgctt
ctactgaaatctcttggtgtagaagatctacttaaatttcattttatggatcctcctcct
caggataacttgcttaattcccagtatcagttgtggactctaggtgccttggataatact
ggtatgctaacaaagttagggagagcaatggtagagtttccacttgatccagcactttca
aaaatgttgttggcaggtgtagaaatgcattgctcagaagaaattttaacaattgtttcc
atgttgtctgtaccagcactcttctaccgtcccaaaggtagggaggaggaagctgatgca
atgcgtgaaaaatttcaggtaccagagtctgaccatctgacttatttgaatatatataga
cagtggcgtctgcagaaatattccatgaattggtgtaataagcatttcttacattttaaa
gctcttaaaaaagtaagagaagtaagacagcagttacatgatattatggaacagcaaaag
ctaaaggtaattagttgtggtatggatgaagacttagtacgaaagtgcatatgtgctgca
tacttccatcaggcttgccgcctaaaagggattggtgaatatgttaaccttcgtacagga
acaccttgccacctccaccctacctcagctctgtttggtatgggatacacacctgattac
attgtataccatgaactggtaatgacaagtaaagagtacatgcagtgtgtcacagcagtg
gaaggagggtggttagctgaagtgggaggtaaattctacagcattaatgaaggtggggcg
tctcggatggagaagcggcgccaggctcttgcacacaaagctgccatggaagcagagatg
gacagagcccaggacacactgaaggcacgagcagaagaaaagcagcgaagggaagaatca
tcccgtcgccagcaagtgtatgacgttggcacacccagacgtgtgcagacttcagcacga
tttggtatttaa
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integrated database retrieval system
