KEGG   Penaeus monodon (black tiger shrimp): 119572900
Entry
119572900         CDS       T08784                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB9-like
  KO
K03017  DNA-directed RNA polymerase II subunit RPB9
Organism
pmoo  Penaeus monodon (black tiger shrimp)
Pathway
pmoo03020  RNA polymerase
pmoo03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pmoo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    119572900
  09124 Replication and repair
   03420 Nucleotide excision repair
    119572900
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pmoo03021]
    119572900
   03400 DNA repair and recombination proteins [BR:pmoo03400]
    119572900
Transcription machinery [BR:pmoo03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     119572900
DNA repair and recombination proteins [BR:pmoo03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      119572900
SSDB
Motif
Pfam: Zn_ribbon_RPB9 Zn_ribbon_TFIIS Zn_ribbon_recom DZR SR1P RIM2a_ZnF Lar_restr_allev
Other DBs
NCBI-GeneID: 119572900
NCBI-ProteinID: XP_037775777
LinkDB
Position
5:complement(4177471..4183449)
AA seq 128 aa
MSLMAKGGGDGPGFVGIRFCQECNNMLYPKEDKENKILLYACRNCDYKMPTENNCIYVNK
LMHEIDELRHINPEVIQDPTLPRTDDHPCPRCSTRDAVFFQAQTRRAEDEMRLYYVCCNS
ECTHRWTE
NT seq 387 nt   +upstreamnt  +downstreamnt
atgagtcttatggcaaaaggaggtggagatggaccaggttttgtcggtatccgtttctgt
caggagtgtaacaatatgttgtatccaaaggaagacaaggaaaacaagatattgctttat
gcctgcaggaactgtgattacaaaatgcccacagaaaataattgtatttatgtcaacaag
ttgatgcatgaaattgatgaactccggcacattaacccagaagtgatacaggacccaaca
ctgccacggacagacgaccatccatgcccaaggtgtagtacacgtgatgcggtattcttc
caagcccagaccaggagagctgaagatgagatgagactgtactatgtatgttgcaatagt
gagtgcacacaccgttggactgagtaa

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