Penaeus monodon (black tiger shrimp): 119573127
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Entry
119573127 CDS
T08784
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
pmoo
Penaeus monodon (black tiger shrimp)
Pathway
pmoo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmoo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119573127
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmoo03019
]
119573127
Messenger RNA biogenesis [BR:
pmoo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
119573127
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
119573127
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
119573127
NCBI-ProteinID:
XP_037776099
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All DBs
Position
5:23901347..23962173
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AA seq
775 aa
AA seq
DB search
MAASRKLQGEIDRCLKKVAEGVEQFEDIWQKVHNASNSNQKEKYEADLKKEIKKLQRLRD
QIKSWLASGEIKDKSQLLENRKLIETQMERFKVVERETKTKAYSKEGLGAAQNKDPAQRE
REDLNNWLSSSIDTLNIQMDQFESEIESLLATQKKKKMDKEKSDRIEDLKEYIERHQYHI
KKLEILMRMLDNQSIDCDQIKMIKEDIEYYIESSQDPDFSENLGLYDDIDMEDLDYPTPE
ITVGKHVLGGSHDSTDGSTPSSVCGSSPAPSPATNHSNDHDAPTTPHDKKRSNKNDESRS
VSSVKSSQPVKPMVVRPTTNNINTNNNISSNNSTTTSNSSSGSTTSIVVVNTNSSSKATP
PPSTPTKPVLGSTSQTTPNNSSTSSGTSNHLITTSQQNSTGRHSPEPSGLINSGIVNNTS
GSGSNSSSSSSCSNSSSSSGNSVSNSTGSGSSSSSSSSSSSSTSSSSGSSNNSSSSTSSN
SSSNGLSSGVSSSVSVTSPQGSLAGSATTTPALPSGAPTPSAAPTHQGHTPAMNASDTAV
SLKAIAQKKVNEVNSSSITPAVLESSSCAVSNTTTSSTNSNANNNNNNNSSSTRTITEKS
TTTCEANIPPLLGVAPLGPAKLTVEHDLQFKMLQAAYYHMPHPSDSERLRVHLPRQPCQT
PLYYPQVSGSDLPVSPPMSDTVDFFQRLSTETLFFIFYYMEGTKAQYLAAKALKKQSWRF
HTKYMMWFQRHEEPKAITDEYEQGTYIYFDFENWGQRKKENFTFEYRFLEDRDLN
NT seq
2328 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgtcgagaaaattacaaggtgaaattgatcggtgcctgaaaaaggtagctgag
ggcgtggaacaatttgaggacatctggcaaaaagtccataatgcctccaacagtaaccaa
aaggaaaaatatgaagcggaccttaagaaggagattaagaagcttcagagattacgagac
caaatcaagtcctggttggcctcgggggaaatcaaggacaagtctcagctccttgaaaat
cggaagttgatagagactcaaatggaaagatttaaagttgtagaaagagaaacaaagacc
aaagcatatagtaaggagggccttggggcagcacaaaacaaggatccagcccagcgggag
agagaagacctaaacaattggctcagttcctctatagacacgctaaatattcagatggac
caatttgagtcagaaattgaatctttattggcaacgcaaaagaagaagaaaatggacaaa
gagaagtcggatcgaatagaagatctcaaggaatatatagaaagacatcaataccacatc
aagaagttagagattctaatgagaatgttagataaccagtccatagattgtgaccagatc
aaaatgatcaaagaagatattgagtactacattgagtcatctcaggatcctgacttcagt
gaaaatcttggtctttatgatgacatcgacatggaagacctggattaccccactcctgaa
ataactgtagggaaacatgtgctgggcgggagtcacgacagcacggacgggtcgacacca
tcttctgtgtgcgggtcctcgcctgccccgtctcctgccacaaaccattccaatgaccat
gacgcacccaccacccctcatgacaagaagagaagtaataaaaacgacgagtccagatcg
gtcagttcagtgaagtcaagccaacctgtcaaacctatggtagtgagaccaacgaccaac
aacatcaacaccaataataatattagttcgaacaacagcaccaccaccagtaacagcagc
tctggatctactacttccattgttgtggtcaacactaattcatcatcaaaggccacacca
cctccatccacccccacaaagcctgtactaggttcaacttctcaaactactccaaacaac
agtagcacaagttcaggtacttccaaccacctaattaccacctcacaacaaaatagcaca
ggaagacattcaccagaaccaagtggattgataaatagtggtattgtgaacaacaccagt
gggagtggaagcaacagtagcagtagtagcagctgcagcaacagcagtagcagcagtggc
aactctgtatcgaacagtacaggtagtgggagtagcagcagcagcagtagcagcagcagc
agtagcaccagcagcagcagtggcagcagcaacaatagcagcagcagtaccagcagcaac
agcagcagtaatggtctcagtagtggggtaagcagcagcgtgagtgtgacgtcaccgcag
ggtagtctggcaggcagtgcaaccactacaccagcattaccttcaggggcaccaacgcca
tctgcagctcccacacatcaagggcacacgccagctatgaatgcttcagacactgcagta
tctttaaaagccatagcgcagaagaaagtcaatgaggttaattcttcatcaataactcca
gcagtcttagaaagcagcagctgcgcagtcagcaacaccactacgagcagcaccaactcc
aatgccaacaacaacaacaacaacaacagctccagcaccaggaccatcactgagaagtcc
acaacgacttgcgaggccaacatcccgcccttattgggtgtcgctcccctcggtcccgcc
aagctgaccgttgagcatgacctgcagttcaagatgcttcaggcggcctattaccatatg
cctcacccgtccgactcggagagactgagagtgcacctgccgcgccagccttgccagacg
ccgctctactatccacaggtgagcggctctgacttgccggtctcgcctcctatgtcagat
acagtagacttctttcagcggctgtctaccgaaactctcttctttatattttattacatg
gagggaacgaaagcccagtacctggcagcaaaagctctcaaaaagcaatcttggagattc
catacaaagtacatgatgtggtttcagaggcatgaagagccaaaggcaatcacagatgaa
tatgaacagggcacatatatctacttcgactttgagaactggggccagcggaagaaggaa
aacttcacgtttgaataccggttcttggaagaccgggatctgaactaa
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