Penaeus monodon (black tiger shrimp): 119575655
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Entry
119575655 CDS
T08784
Name
(RefSeq) LOW QUALITY PROTEIN: protein similar-like
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
pmoo
Penaeus monodon (black tiger shrimp)
Pathway
pmoo04137
Mitophagy - animal
pmoo04140
Autophagy - animal
pmoo04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
pmoo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
119575655
04137 Mitophagy - animal
119575655
04148 Efferocytosis
119575655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pmoo03000
]
119575655
Transcription factors [BR:
pmoo03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
119575655
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_11
PAS_3
PAS
HIF-1a_CTAD
HLH
PAS_9
PAS_4
Motif
Other DBs
NCBI-GeneID:
119575655
NCBI-ProteinID:
XP_037779213
LinkDB
All DBs
Position
7:40370346..40506168
Genome browser
AA seq
1105 aa
AA seq
DB search
MCLRTNFEAVGRGARPYKRANANSAKAQKNSEKRKEKSRDAARCRRGKESEIFTELANAL
PLPAQTVSQLDKASVMRLTIAYLKTRALCQAGECHFFFRVHSQDKADSQDKADSQDKADS
QDKADSQDKADSQDKADSQDKADSQDKEKAIPGKRFLGDKAILRISRFREKAVSQDKADS
QDKADFRDAPHVTSDVSVCIGNSSRGHSSLQVDVMGQSLYEYTHPCDHEEVRDLVSAKGP
HQPRHAFLRLKCTLTAKGRSVNLKSASYKVVQVSGEVVQHEEDQAWLVALGTPVPHPSNI
EFPLDKQTFVSKHSLDMKFTYVDDNVGEFCGYGPKELVGRSLYEMHHALDSELVKEAYKT
LRSKGQVETGQYRFLARGGGYVWWCPGTLLRGPKXHKPQYVVCXNYVVSGVESPGEIVSE
LQLMCSKSSSSSSSSNSSKEPDSTCSKVDSRSPPVSLSPPTVAPSIPTPTLPLPKSPSQP
KTQSQTPRVTPVGPPPTPVATTSKIFAPRTEEMNKGYLTFSEDDPQCTVLKEEPEDLTHL
APSGGDTCVPLPAFMPNLDDMFSFDYAQIPISATDVLFTTASSVSEEQESNSGFEKKLIS
EEKRLSSRLSGGNVIINNSIGNSPASSCSSPPSGGLRTPEPPKPLLSQAALPSALEKKFN
FGTLSCSSHPRTTTESFFSQLDENSNPGTEFTKVELKIEDHNMDSDEFDMRAPYIPHSDE
MLVLSSDDLLWGAEVEPAVSPKNQLGYHRETKIYTLNSKEDSSLAQLLRDTDPPITSCRT
GKDSKVDNGGGSQQSQYEQSKFFDGGENFVDPNKVLPGHCIGKDGLDGSPDCNDQGEDEP
PAVMVQETVEPPPPLITIDTNQMSLAVKRGPSPNSSPILTHKKLCSLAHHQRQMLSSQAN
GDGHLALLHPQQQQTGVRLLTTPYAPTMQQLLISKEPITVRGRHSGGLGTHQNSSNDSRH
SVLRNLLDVEEVGSIVRCEPQPGGSGVSSATTRPSQDRMTDMVGTGGRETNTGNQISAPK
LRLVTGSQGTLMHAGHLAIKVASKGSGDGFFKRVRRQDPLLLMDPDLSIPDLLDLTQLDY
EVNAPANNCSLLQGSDLLMALDQSP
NT seq
3318 nt
NT seq
+upstream
nt +downstream
nt
atgtgcttaaggactaattttgaagctgttggcaggggagctcgaccctacaaacgagcc
aacgcaaactccgctaaggcacagaagaacagcgagaagcggaaggagaagtctcgcgac
gcggcaagatgtcggcgaggcaaggagagcgagatcttcacggagctggccaacgccctg
cccttgccggcgcagacggtgtcgcagctggacaaggcgtctgtcatgcggctcaccatc
gcctacctgaagacaagggcgctgtgccaggccggtgagtgccattttttttttcgtgta
cattctcaggataaagcagattctcaggataaagcagattctcaggataaagcagattct
caggataaagcagattctcaggataaagcagattctcaggataaagcagattctcaggat
aaagcagattctcaggataaagaaaaagcgattccgggaaaaaggtttctcggggataaa
gcgattctcaggataagcagatttcgggaaaaagcagtttctcaggataaagcagattct
caggataaagcagatttcagggatgctccacatgtcacgtctgatgtatcagtctgcatc
ggcaatagcagcagaggccattcctcgttgcaggtggacgtgatggggcagtccctgtac
gagtacacccacccctgcgaccacgaggaggtgcgcgacctggtctccgccaagggcccg
caccaaccccgccacgccttcctcaggctcaagtgcacgctcacggccaaggggcgcagc
gtcaacctgaagagcgcgtcctataaggtggtgcaggtgagcggcgaggtggtgcagcac
gaggaggaccaggcgtggctggtggccctggggacgcccgtgcctcacccctccaacatc
gagttcccgctggataaacagaccttcgtcagcaagcactccctggacatgaagtttaca
tacgtggatgacaacgtcggagagttctgtggctacggccccaaggagctggtggggcgt
tccctctacgagatgcaccacgccctcgactccgagctggtcaaagaggcctacaaaaca
ctgcgtagcaaggggcaggtggagacggggcagtaccggttcctggcgagaggcggcggc
tacgtgtggtggtgcccaggcacgctcttacggggccccaagngccacaagccccagtac
gtcgtgtgcnccaactacgtcgtcagtggtgtggagtctccaggagagattgtgtcagag
ctgcaattgatgtgcagcaagagcagcagcagcagcagcagcagcaacagcagcaaagag
ccagacagcacctgcagcaaggtggacagccggtcccctcctgtcagcctttcacccccc
actgtggctcccagcattcccacgcccacactccctctgcccaagtctccatcccagccc
aagactcagagccagactccacgtgtgacaccagtgggcccgcctccgacacctgtggca
accacatccaagatctttgctcctcgtactgaggaaatgaacaaaggatatttgacgttc
tctgaagatgatccacaatgcacagtgctgaaggaagaacctgaggacctgacccacttg
gctccctcggggggtgacacgtgcgtgcccctgcctgcgttcatgcccaacctggatgat
atgttctcatttgactacgcccagatacccatttctgccactgatgtcctcttcaccact
gcctcgtctgtgtccgaagagcaggagagcaactccggttttgagaaaaaactaatcagt
gaggagaagcgtcttagcagcagacttagtggaggaaacgtgattattaacaacagcatc
ggtaacagcccagcctccagttgcagcagccctccctcaggtggactccgcacgcctgaa
cccccaaagcctttgctctctcaggcggctttgccatcggccctggaaaagaaatttaat
tttgggacattaagctgcagcagtcatcccagaacaacaacagagagtttcttctcgcaa
ctggatgagaattccaaccctggtaccgagttcaccaaagtggagctcaagatagaagac
cacaacatggactctgatgaatttgatatgagggcaccatacataccccacagtgatgaa
atgttggtgttgagttcggatgatcttttgtggggtgcagaggtcgagcctgctgtatct
ccaaagaaccagcttggataccacagagagaccaagatttataccttaaacagcaaggaa
gattcgagtcttgctcagcttctgcgagatactgacccacccatcaccagctgtcgcaca
gggaaagatagtaaagttgataacggaggaggctcgcagcagagccagtatgaacaaagc
aagttctttgacggaggggagaattttgttgatccaaacaaggtacttccaggacactgt
attggaaaagatggattagacggatctcctgattgtaatgaccaaggtgaggatgagcca
ccagccgtaatggtgcaagagacagtagagccaccgccacccttaatcaccatagacact
aaccagatgtcactggctgtcaagagggggccatctccaaattcatctcccattctcacc
cacaaaaagctctgctccctcgcacatcaccagcgacagatgctatcatctcaagcaaat
ggggatgggcatttagcactcctgcatcctcagcagcaacagacaggagtgcgcctgctg
accacgccttatgcccccactatgcagcagctgctgatcagcaaagagcccatcacggtg
cggggaagacattctggaggcctcggcacccatcagaattcaagcaatgacagtagacac
tcagtgcttcgaaatctgctggatgttgaagaagttggaagtatagtgaggtgtgagcct
caaccaggagggagcggagtgagttctgcaacgacgcgtccgtctcaagacaggatgact
gacatggttggcacgggaggcagggaaaccaatacaggcaatcagatttctgctcccaaa
ctgaggcttgtcacaggcagccaagggacactgatgcatgccggacatcttgccatcaag
gtcgcttcaaagggctcaggagatggtttcttcaagcgagtgcgccgccaggacccactg
ctcttgatggaccctgacctgtcgattccagacttgctggatcttacacaattagactat
gaggtcaatgctcctgccaataattgtagtctgctccagggatctgacctgctcatggct
ttagatcagagtccgtaa
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integrated database retrieval system
