Penaeus monodon (black tiger shrimp): 119577790
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Entry
119577790 CDS
T08784
Name
(RefSeq) polyadenylate-binding protein 4-like
KO
K13126
polyadenylate-binding protein
Organism
pmoo
Penaeus monodon (black tiger shrimp)
Pathway
pmoo03015
mRNA surveillance pathway
pmoo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmoo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
119577790
09123 Folding, sorting and degradation
03018 RNA degradation
119577790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmoo03019
]
119577790
03041 Spliceosome [BR:
pmoo03041
]
119577790
Messenger RNA biogenesis [BR:
pmoo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
119577790
mRNA cycle factors
Stress granule specific factors
119577790
Spliceosome [BR:
pmoo03041
]
Complex C
Other components
Complex C specific factors
119577790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_7
RRM_5
RBD_RDR6
RRM_MARF1
RRM_RdRP1_2
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
119577790
NCBI-ProteinID:
XP_037781284
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All DBs
Position
10:5568398..5578278
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AA seq
645 aa
AA seq
DB search
MNPSGPSYPLASLYVGDLHADCTEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVMKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFS
AFGNILSCKVATDEAGNSKGYGFVHFETEEAARSAIQKVNGMLLNGKKVYVGKFIPRAER
EKELGEKAKRFTNVYVKNFGDDLDDDKLYEIFSQFGKITSHRVMTNEDGKSKGFGFVAFE
EPEAAEKACEEFNGKEMNGKQIYVGRAQKRGERQAELKKKFEMMKIERMNRYQGVNLYIK
NLDDTIDDERLRKEFSNYGTITSAKVMTEDGRSKGFGFVCFSTPEEATRAVTEMNGRILV
SKPLYVALAQRREDRKAHLASQYMQRVAGMRMQQMGQMFQPSGTSYFMPTMPQAQRFYSP
QMAQIRATPRWPTQPTAQVRAGAQAASAFPMQAAPYRSAPRQAQPAPRNVRPITAAAATA
QQQQIPNLMQAARPVAPNAGAVPPALSSAARASNYKYTTNMRNPPAVSGGGPASAAAVAP
VVQPAVHIQGQEPLTPSMLASALPQEQKQMLGERLFPLIRDIYPELAGKITGMLLEIDNS
DLLHMLEDRNSLKAKVEEAVAVLQAHQAKQQVVAVAVAAQKKEDM
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atgaatcccagtggccctagctaccctctagcctcgctctacgtgggggatctccatgcg
gattgtacagaggccatgctcttcgaaaagttctcatctgctggacctgtgctctccatt
cgtgtgtgcagagacatgattactcgccgctctctgggctatgcttatgtcaacttccag
caaccagctgatgctgaacgagccctagacacaatgaattttgatgtgatgaagggtcgg
ccgatccgaatcatgtggtcgcagcgtgacccttcccttcgaaagtctggtgttggcaat
gtgttcatcaagaaccttgataaatctattgataacaaggccatgtatgatacattctct
gcatttgggaatattctcagctgcaaggttgctacagatgaggctggcaattccaaaggc
tatggatttgtacattttgaaaccgaggaagcagcaaggagtgctatccagaaagtgaat
ggtatgttgcttaatggcaagaaagtttacgtaggcaagttcatccccagggcagaacgg
gagaaagagttgggagagaaggctaaacgtttcactaatgtgtacgttaagaacttcggt
gatgacctggatgatgataagctctacgagattttctcgcaatttggcaagattaccagt
catagagtaatgacaaatgaggatggcaaatccaagggctttggttttgttgcatttgaa
gaacctgaagcagctgagaaagcctgtgaggaattcaatggaaaggaaatgaatgggaag
cagatctatgtaggaagggctcagaagagaggagaacgccaagcggagctgaagaagaaa
ttcgagatgatgaagatcgagcgcatgaacagataccaaggagtgaacttgtacatcaag
aatttggatgacaccatcgatgatgaaaggctccgcaaggagttctccaactatggtacc
atcacaagtgccaaggttatgactgaagatggtcgctcaaagggctttggattcgtttgc
ttctcaacacctgaggaagctacccgtgctgttacagagatgaatggccgtatcttggtc
agtaagcctctgtatgtcgccctcgctcaacgtcgtgaggatcgtaaggcacatctggca
tctcagtacatgcagcgtgtggctggtatgcgcatgcaacagatgggacaaatgttccaa
ccaagtggcaccagctacttcatgcctaccatgccacaagctcagcgtttctactcacca
cagatggctcagatcagggcaactcctcgctggccaactcagccaacggcccaggtgcga
gcaggtgctcaggcagccagtgctttcccaatgcaggctgccccttacagatcagcccct
cgccaagcacagccagcaccacgcaatgtccgtcctattactgcagcagctgcaactgct
cagcagcagcaaatcccaaacttgatgcaagcagccaggcctgttgcaccaaatgctggt
gcagttccacctgcactttcatctgcagcacgcgcctcaaactacaagtatacaaccaac
atgcgcaatccgccagctgtgtctggaggcggcccagcttcagccgctgcagtggcccct
gttgtccagcccgctgtgcacatccagggacaagagccactcactccatctatgctggcc
tctgccttgcctcaggagcagaagcagatgctgggagaacgtcttttccccctcattcgc
gacatctatcccgagcttgcgggtaagatcactggcatgttgctggagattgacaactcg
gatcttctgcacatgcttgaggatcgcaactccctcaaggcaaaggtggaggaagctgtg
gctgtgctccaggcccatcaggccaagcagcaggtggtggctgttgctgttgctgctcag
aagaaggaggacatgtaa
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