KEGG   Penaeus monodon (black tiger shrimp): 119580824
Entry
119580824         CDS       T08784                                 
Name
(RefSeq) THO complex subunit 3-like
  KO
K12880  THO complex subunit 3
Organism
pmoo  Penaeus monodon (black tiger shrimp)
Pathway
pmoo03013  Nucleocytoplasmic transport
pmoo03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pmoo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    119580824
  09122 Translation
   03013 Nucleocytoplasmic transport
    119580824
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pmoo03019]
    119580824
   03041 Spliceosome [BR:pmoo03041]
    119580824
Messenger RNA biogenesis [BR:pmoo03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     119580824
Spliceosome [BR:pmoo03041]
 Complex C
  Other components
   EJC/TREX
    119580824
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    119580824
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st WD40_CDC20-Fz Beta-prop_WDR5 Beta-prop_WDR3_1st WD40 WD40_Prp19 Beta-prop_EML_2 WD40_WDHD1_1st ANAPC4_WD40 WDR55 Beta-prop_WDR3_2nd EIF3I WD40_Gbeta Beta-prop_CAF1B_HIR1 Beta-prop_WDR19_1st Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_Aladin Beta-prop_RIG_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_EML Beta-prop_WDR90_POC16_2nd eIF2A Beta-prop_NOL10_N Beta-prop_IFT140_1st RMC1_N DSE1_N Beta-prop_Vps41 Beta-prop_WDR35_TULP_N Beta-prop_WDR75_1st WDR90_beta-prop_4th Tricorn_2nd NBCH_WD40 PROPPIN Beta-prop_EIPR1 PAC11 Beta-prop_HPS5 CFAP251_N Beta-prop_TEP1_C TRM82_WD Beta-prop_WDR11_1st PD40 Peptidase_S9_N WD40_RFWD3 Cytochrom_D1 Beta-prop_SCAP KNTC1_N Beta-prop_ELP1_1st DPPIV_N Beta-prop_Nup120_160 WD_LRWD1
Other DBs
NCBI-GeneID: 119580824
NCBI-ProteinID: XP_037784895
LinkDB
Position
2:8254052..8266808
AA seq 349 aa
MRDVTTQGAQCKQTKTECKMGSSYMAYFEEMKSYFQTHNKQKEYIGHNSKVHTIGWNADG
RRLASGSYDKCVTIFVFDVHRETLRKDYTYKGHGDSVDQLCWHPTHSEQLTSASGDKTVR
IWDTRTHKCSATINTKGENINITWSPDGQTIAVGNKEDLVSFIDVRSQKIRHEQQFKFEV
NELSWNNANDLFYLTNAQSGQGYIHIYNYPEMELVHSIHAHPGNCICIKFEPQGRYFATG
SADALVSIWDAQELYCKRTLPRLEWPVRTLSFSYDGQLLASGSEDQTIDIAHVDTGERVA
HISVAYPTFTLAWHPRLFLLAYACDDKDDRERDRDAGTVKLWGLSGERS
NT seq 1050 nt   +upstreamnt  +downstreamnt
atgcgcgacgtgacaacacaaggcgctcagtgtaaacaaaccaagacagagtgcaaaatg
gggtcgtcttacatggcgtatttcgaggagatgaagagctacttccagacgcacaataag
cagaaggaatatataggacataactccaaagtccacaccatcggctggaatgcagatggg
agaagattggcttcgggatcttatgataaatgcgtgacgatttttgtgtttgacgtccat
cgggaaacgctgaggaaagactacacatacaagggccatggtgacagtgtggaccagctg
tgttggcaccccacacactcagagcagctcacctcggccagtggtgacaagacagtcaga
atatgggacacaaggacacacaaatgctctgccactataaatacaaaaggtgagaacatc
aacatcacatggtcgccagatggtcagacgattgctgtcggaaacaaggaggacctggtg
tcgttcatagatgtccggagccaaaagatccgccacgagcagcagttcaaattcgaggtc
aatgagctgtcatggaacaatgcaaatgacctcttctacctcaccaatgctcaaagtggc
caaggatatattcatatatacaattacccggagatggaactggtgcattccatccatgcc
catccaggcaactgcatctgtattaagtttgaaccccaaggtagatactttgccacaggg
tctgctgatgcccttgtttctatatgggacgctcaggaactctactgcaagaggacatta
cccagattggagtggcctgttcgcactttgagcttttcctacgatggccagcttttagca
tcaggaagcgaggaccagaccatagacatagctcatgttgacacaggggagagggttgca
catatcagtgtggcttatccaacctttaccttagcttggcatccccgactctttcttctg
gcttatgcctgtgatgacaaggatgaccgtgagcgagaccgagatgcaggaacggtgaag
ctttggggtctgtcaggggaacgtagctga

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