Penaeus monodon (black tiger shrimp): 119580998
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Entry
119580998 CDS
T08784
Name
(RefSeq) general transcription factor IIH subunit 4-like isoform X1
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
pmoo
Penaeus monodon (black tiger shrimp)
Pathway
pmoo03022
Basal transcription factors
pmoo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pmoo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
119580998
09124 Replication and repair
03420 Nucleotide excision repair
119580998
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmoo03021
]
119580998
03400 DNA repair and recombination proteins [BR:
pmoo03400
]
119580998
Transcription machinery [BR:
pmoo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
119580998
DNA repair and recombination proteins [BR:
pmoo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
119580998
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Pus10_C
Motif
Other DBs
NCBI-GeneID:
119580998
NCBI-ProteinID:
XP_037785186
LinkDB
All DBs
Position
14:complement(24093196..24105193)
Genome browser
AA seq
440 aa
AA seq
DB search
MIITESIHKDGCFRELPELSRHFIMRLLFVTKPISQIVLAAWIPHQEPSKDLGDIAAEHK
QSTQILLDMYIWQEMKDHHGNAAIKLNSTFRENLKIATLGGGKPWTMSAALDPDPHQRDL
EFLDKYAMDRWESVLQFLVQPGRGATVISRDAMRTLLHAGLIESSDESDSPNMQITSSGF
QFLLLDTASQVWFFILKYLETVTERGLSLVACLTFLFKLSFSTLGKDYSMEGMNNELLTF
LQHLREFGLVYLRKRSSGRFYPTRLALNITAGQNKGNLDVPKQGDLVIETNYRIYAYTTS
ELQIALLSIFSDIEGRFPNMVVACISRGSVRRALLKGIGAEQIIHFLRQHCHPQMYKQNP
VVPRTVSDQIKLWEMERERLEFSEGVLYKDFMSVHDYLLLSNYASSKGVLIYSDEKQRTV
VVTKKGHPAIKQFGKKKQSK
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atgattattactgaaagtattcataaagatggatgtttcagggagctcccagaattatca
cggcatttcattatgcgcctcctgtttgtgacaaaaccaatctcccagatagtcctagca
gcatggatccctcatcaggaaccaagcaaagaccttggagacatagcagcagagcacaag
cagagcacccagattctgcttgacatgtacatctggcaggagatgaaggaccatcatggc
aatgcagctattaaactcaacagtacttttagagagaacttgaagattgctactctagga
ggaggaaaaccatggaccatgtcagctgccttagatccagatccacatcaaagggacttg
gagtttctggacaaatatgctatggatcggtgggaaagcgtgctgcagttccttgtccag
ccagggagaggagcgacagtgatttccagggatgcaatgagaacattgctccatgctggt
ctcattgaaagcagcgatgagtcagattcgcccaacatgcagatcacaagctctggcttc
cagttcctcctgctggacacggcatctcaagtgtggtttttcatcctcaagtacctggag
acagtcacagaacgtggactcagccttgtggcttgtttgactttcctcttcaagctttcc
ttttctacacttggaaaggattacagtatggaagggatgaacaatgagctactaactttt
ctgcagcacttacgggaatttggacttgtatacttacgaaaaagaagttctggcagattt
tacccaacgagattagctcttaatattacagcaggtcagaataagggcaaccttgatgtt
ccgaaacaaggtgatcttgtcattgaaacaaattacagaatatatgcctatactacttca
gaactacaaattgcacttctctccatattttctgacatagagggaaggtttcctaacatg
gtcgtagcttgcatatcgagaggaagtgtgagaagagctctgttgaagggtatcggtgct
gaacaaattattcatttcctcagacagcattgtcatccccagatgtataaacaaaatcca
gttgttccacgtacagtttcagatcagattaaactgtgggagatggaaagagagagactt
gaatttagtgaaggagtattgtacaaagacttcatgtcagttcatgattatcttttgctc
tcaaattatgcatccagcaaaggtgttttgatatactcagatgaaaaacagagaacagtg
gttgtgacaaagaaaggacatcccgcaataaaacagtttggaaagaaaaaacagtcaaaa
taa
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