KEGG   Penaeus monodon (black tiger shrimp): 119581005
Entry
119581005         CDS       T08784                                 
Name
(RefSeq) LOW QUALITY PROTEIN: DNA ligase 1-like
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
pmoo  Penaeus monodon (black tiger shrimp)
Pathway
pmoo03030  DNA replication
pmoo03410  Base excision repair
pmoo03420  Nucleotide excision repair
pmoo03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pmoo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    119581005
   03410 Base excision repair
    119581005
   03420 Nucleotide excision repair
    119581005
   03430 Mismatch repair
    119581005
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pmoo03032]
    119581005
   03400 DNA repair and recombination proteins [BR:pmoo03400]
    119581005
Enzymes [BR:pmoo01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     119581005
    6.5.1.6  DNA ligase (ATP or NAD+)
     119581005
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     119581005
DNA replication proteins [BR:pmoo03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    119581005
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     119581005
DNA repair and recombination proteins [BR:pmoo03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     119581005
   NER (nucleotide excision repair)
    Other NER factors
     119581005
   MMR (mismatch excision repair)
    Other MMR factors
     119581005
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Other DBs
NCBI-GeneID: 119581005
NCBI-ProteinID: XP_037785195
EnsemblRapid: LOC119581005
LinkDB
Position
14:complement(24477768..24499810)
AA seq 1061 aa
MVQQSILSFFSSPKAKKPAAEADNKSKDEKKKESTEVEDSPVKRTPRRKATVIESDSEDE
AVPSTSSPSSKSDEEKENKSKGTPKKPSENCDEDDSDEKAEKDSSSKSKKTPKEKKGNSK
AKGKKSTPAKENKTPVKKEKASTEEMEVEGDENETSEASSLKTPKKLDKPKTRASPGFTP
DTVPPLRKTGKQMKRKSDSLEEKQKEIVKKIKVEEKEKEDSVAMQEEEEEKEESKKDKKP
HAGKDNIKEEVKEQKEEEEEGEQMDVDDAEEKGKEKDTAEKKKPTSIHSFFAPRSSKSTP
TNTKVEKEKEIKKEKKSPGSPKAKREPKSPQQRNAKKSPKSPSDDKNSSESKMKSPTKEQ
KDDKESSGDEKKSPQKEAAEKSEDKAKASPAPEKKVVRNPFAPKASGAKDPGADYNPSKS
KYPPLELSEPGEKTPYLALAKKFGMIKSQGAAXNLRWLANFFRSVIVLSPDDLLQCVYLC
LNKVAPAFEGTELGIGETILMRAIAQASGRSVDKIKQDAEQKGDLGIVAEQSRSTQRIMF
QPAKLTVKGVFDKLKEIASMSGKDVQSKKIDKKQRGLRLRFFLKPVITDPQWKLRXGFAR
DVLQAIAQASFLPTPPAQNPPKNHXXGGGMNPKKLKAKFDDYGMILKTTYCEFPSYDKII
PVLLTKGLEELPNHCTLTPGIPLKPMLAHPTSGVSEVLKRFENAKFTCEFKYDGERAQIH
LKEDGTVNIYSRNQENNTTKYPDIISRLKNALGEDVKSCVIDSEAVAWDQEKKQILPFQV
LSTRKRKDANEKDIKVQVCVFPFDLLYFNGKSLVKKSFEERRALLRDNFKEVEGEFVFAK
SMDSTNTEDIEEFLEESIKGNCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTI
DVVVIGGYTGRGKRTGQYGGFLLACYDPENEEFQSLCKIGTGFTEEDLQKHTAFFKEHII
EKPKSYFRYENSVAPDHWFEPVQVWEIKCADLSISPVHKAAAGIVDPEKGISLRFPRFLR
IRDDKKPEEATSASQIADLYNSQDQIKNKKDSGNSNIEDFY
NT seq 3186 nt   +upstreamnt  +downstreamnt
atggtgcaacagtcgattttgtcgttcttctcttctccgaaggccaagaaaccagctgca
gaagccgacaataaatccaaagatgagaaaaagaaagaatcgacagaggtggaagactcg
ccagtcaaacgcacacctcgacgcaaggcaacagtaattgaaagtgacagcgaggatgaa
gctgtcccatctacaagtagcccatccagcaagtcagacgaggagaaagagaacaaatca
aagggaaccccaaagaagcccagtgaaaattgtgatgaagatgatagtgatgagaaggct
gagaaagactcttcttcaaaaagcaagaagacaccaaaggagaagaagggcaacagcaag
gctaagggaaagaaaagcacccctgccaaagagaacaagacaccagtgaaaaaagagaaa
gcaagcactgaggaaatggaggtagaaggtgatgaaaatgagacttctgaagcatccagc
ttaaagaccccaaagaaattggataaaccaaaaacaagagcctcacctggatttactcct
gatacagttcccccccttcggaaaactggaaaacagatgaagcgaaaaagtgatagcctg
gaagaaaagcaaaaggagatagtcaagaaaatcaaggtagaagaaaaggaaaaggaagac
tctgtggctatgcaggaggaggaggaggagaaggaggagtctaaaaaggacaaaaaacca
catgctggaaaggacaacattaaggaagaggtgaaagagcaaaaggaagaggaggaagag
ggagaacagatggatgtggatgacgcagaggagaagggaaaagagaaagatacagctgag
aaaaagaaaccaacttcaatccatagcttttttgctccaagatcctctaagtctactcca
acaaacacaaaagttgagaaagaaaaagagataaagaaagagaagaaaagcccaggcagt
cccaaagctaaaagggaacccaaatcccctcagcaaaggaatgccaagaaatcccccaag
agcccttcagatgacaagaattcctctgaaagcaaaatgaaatcgcccacaaaagagcag
aaggatgataaggagtcctctggggatgaaaagaagtccccacaaaaagaggctgctgag
aaaagtgaagacaaggcaaaggccagccctgctccagagaagaaggtggtgagaaacccc
ttcgctccaaaggcctcgggggcaaaggatcctggggcggattacaatccatctaaaagc
aaataccccccattggagctttcggaaccaggggaaaagacaccatatctggctttagcc
aaaaaatttggaatgattaaaagccaaggggccgctngaaacttgagatggttggcaaat
ttcttcagatctgtcatagttttgtctccagatgacctattgcagtgtgtctatctatgc
cttaataaagtagctcctgcttttgaaggtaccgagttgggcataggagaaacaattctc
atgcgtgcaatagcccaagcctcaggacgtagcgttgacaaaataaaacaggatgctgag
cagaaaggtgatcttggaatagttgctgagcagtctcggtcgactcagagaatcatgttc
cagccggcaaagttgacagtaaagggtgtttttgacaagctgaaagaaattgcatccatg
tctggcaaagacgttcaaagtaaaaagattgacaaaaaacaaaggggtttgcgcctgcgg
ttttttttaaaacccgttattaccgatcctcagtggaaactacgctagggttttgcccgg
gacgtacttcaggccatagcccaggctagcttcctccccaccccccccgcccaaaatccc
ccaaaaaatcattgatgaggggggggaatgaatccaaaaaagctaaaggccaaatttgat
gactatggcatgatactgaagacaacctattgtgaattcccatcatatgacaaaatcata
ccagttcttctgacaaaaggcctagaggaacttcccaaccactgtacactgacccctgga
attccgttgaaacccatgttggcccatcccacttcaggggtgtctgaagtcctgaagagg
tttgaaaatgccaaattcacctgtgagttcaagtatgatggagagagagctcagattcat
ttgaaggaagatggtacagttaacatatatagtaggaaccaggaaaacaacacaaccaag
taccctgacatcatatctcggttaaagaatgccctgggagaagatgtcaagtcatgtgtg
attgactcagaagctgtggcttgggatcaggagaaaaagcaaatcttgcctttccaagtt
ttgagtacaagaaagagaaaggatgcaaatgaaaaggacatcaaagtacaggtgtgtgtg
tttccctttgacttgctctactttaatggcaagtcacttgtcaaaaagtcgtttgaggaa
cgtcgagctttgctgcgagacaacttcaaagaagtggaaggagaatttgtctttgctaaa
agtatggattccacaaatactgaagatattgaagaatttctggaagaatccattaaagga
aactgtgagggtctgatggtgaaaacattggatgtagacgccacctatgaaatagcaaaa
cgatcacacaactggctgaagctgaagaaagactaccttgatggggttggagacacgatt
gatgtcgtggtcattggcggttacacaggtcgaggcaagcgcacaggacaatatggaggg
ttcctcttggcttgctatgatccagaaaatgaagaatttcagtctttgtgcaaaatcggt
actggcttcacagaagaagacttacagaaacacactgctttcttcaaggagcatattata
gagaagccaaagtcttatttcagatatgaaaacagtgttgctcctgaccattggtttgaa
cctgtgcaggtctgggagatcaaatgtgcggacctttccatttctcctgtacacaaagca
gcagcaggaatagttgatccagagaagggcatatctctcagattcccaagattcctcaga
attcgggatgataaaaagccagaggaagctaccagtgcatcacagattgcagacttgtat
aatagccaagaccagattaagaacaagaaggattcggggaacagcaatattgaagatttt
tattag

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