Penaeus monodon (black tiger shrimp): 119581620
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Entry
119581620 CDS
T08784
Name
(RefSeq) general transcription factor IIH subunit 1-like
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
pmoo
Penaeus monodon (black tiger shrimp)
Pathway
pmoo03022
Basal transcription factors
pmoo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pmoo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
119581620
09124 Replication and repair
03420 Nucleotide excision repair
119581620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmoo03021
]
119581620
03400 DNA repair and recombination proteins [BR:
pmoo03400
]
119581620
Transcription machinery [BR:
pmoo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
119581620
DNA repair and recombination proteins [BR:
pmoo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
119581620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH_TFIIH
BSD
Motif
Other DBs
NCBI-GeneID:
119581620
NCBI-ProteinID:
XP_037785667
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All DBs
Position
15:1385774..1397869
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AA seq
547 aa
AA seq
DB search
MSGEREDILLQVNHVRYKKNNGQLYLSQTRVGWMMEESDTFTVSVMYNDIRTQKISPEGK
PKVQLQIVLHDISSHTFQFCNPEGRDKQVVERNLVKERLSQLMNQNKRQPPDELMQKKRM
LDENEQLQQLYRALVPTSIISVDEFWKEIASQYKQTMGPQQDVGVSGAFLADIKPQTDGN
NGKVQYNLTPEIMAAVFKTYPTVKKKHSDYVPHRMSESEFWTRFFQSHYYSVHTTSRSEN
VFSECAKSDDKEWNRDVNSIQNDPLYDLNDIYDGERVHSVEGDLKVAGPKAGSNIIHATM
IKRFNQHSLNILKAQNYSEKEKIMDEIAAKNPNGIPNGDANQEPDLHLHKSKKVRIEEKL
SYEDLENKGNTEITSLIIHQKDRYLTGPTEDTATHGLPPRQVSALQDQLRIAVDNWNPNL
HLSQDSESAYKALQSFSEQSRKSRSSGGIHGDHLPGNLHKELTQVYSSAGELLRHFWSCF
PPRTPQLQEKLHKMHETLCRYHAVTIRPFHEMAVNDYNCNSTILDHLIGMFNIANTKFEN
WKARNTR
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
atgagtggagagagagaggacatcctgctccaggtgaatcatgtgcgttacaagaagaac
aatggacagctctacctgtcccagacacgcgtggggtggatgatggaggagtccgacacg
ttcaccgtcagcgtaatgtacaatgacatcagaacgcaaaaaatatctccggaggggaag
ccaaaagtccagctgcaaattgtcctccatgacatttcgtcccacacattccagttttgc
aatccagaggggcgggataagcaagtggtcgaaagaaacctagttaaggagcgtcttagt
cagcttatgaaccagaacaaacgacaaccccctgatgaattgatgcagaagaaacgcatg
ttggatgagaacgaacaactccagcagctttacagagcgcttgtccctacgtctatcata
tcagtggatgagttttggaaggagatcgcaagccagtacaaacaaactatgggaccacag
caggacgtcggggtgtccggagcatttttggctgacataaaacctcagaccgatgggaat
aatggaaaagttcaatacaatttaaccccagagatcatggctgccgtgttcaagacatat
cccacggtcaaaaagaaacactcagattatgtccctcacagaatgtctgaatctgagttt
tggacccgattcttccagtcccactattatagcgttcacaccactagtcgcagtgaaaat
gtgttttccgaatgtgcaaaatctgacgataaagaatggaatagagatgtgaactcaata
caaaacgacccactgtatgatttgaatgacatttatgacggagagagagtccattctgta
gaaggtgatctgaaagtagctggacccaaagcggggagcaatataattcacgctactatg
atcaaaagatttaaccagcacagtctcaacattctcaaagcacaaaattattccgaaaaa
gagaaaataatggacgagatagcggcaaaaaaccctaatggtatcccaaacggtgatgca
aatcaggaaccagatctccatttacacaagagtaaaaaggtcagaatagaagagaaatta
tcttatgaagacttggagaataaaggcaacacagaaatcacctcgctcatcattcaccag
aaagaccgatacctcacaggccccactgaggacacggcaacgcatggtttaccgcctcga
caggtatcagctctgcaggatcagttaagaatagctgttgacaactggaatccaaacttg
cacttgagccaagattccgaatcggcatacaaggctctgcagtccttcagtgagcagagt
cggaagagtcgaagcagtggaggcattcacggggatcacttaccgggaaatttacacaag
gagctcactcaagtgtatagcagcgccggggaactgttgcgtcacttctggtcgtgcttc
cccccaagaacaccccagctgcaagaaaagcttcacaaaatgcacgaaactctttgccga
taccatgctgtcaccataagaccattccatgaaatggcagtaaatgattataactgcaac
tcgaccattttggaccacctgataggcatgttcaacattgccaatacaaagtttgaaaat
tggaaggcgcggaacaccaggtga
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