Penaeus monodon (black tiger shrimp): 119581667
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Entry
119581667 CDS
T08784
Name
(RefSeq) uncharacterized protein LOC119581667
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
pmoo
Penaeus monodon (black tiger shrimp)
Pathway
pmoo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pmoo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
119581667
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmoo03021
]
119581667
03019 Messenger RNA biogenesis [BR:
pmoo03019
]
119581667
Transcription machinery [BR:
pmoo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
119581667
Messenger RNA biogenesis [BR:
pmoo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
119581667
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
zf_PCFS4
Pcf11_C
DNA_pol3_a_NI
Pfc11_Clp1_ID
Motif
Other DBs
NCBI-GeneID:
119581667
NCBI-ProteinID:
XP_037785723
LinkDB
All DBs
Position
2:complement(19282001..19398776)
Genome browser
AA seq
1880 aa
AA seq
DB search
MTDLPTDVEVAEEYRSSLADLTMNSKPMITMLTMLAEENRSHAAVIVGVIEKHIQQASPN
HRLPVMYLIDSIMKNVGREYIKLFALNIITTFSCVFEKVDERTRKKLYELRHTWNEVFPK
SRLYGLDVKIQSIDPAWPLATGSSTTSQGVSKPNIHINPNIIKPGVVKGSPSLSSTGGHK
GQKDLEILKREEQLLALERQKLELEKKKILLEQSRHQKQEIKPAKVEPEKPPVKPAEDLS
ISSERRSEFLRSYKIKKKTQNKEEVQVGTTIHVDPRRVHQVLPVVAATGPVAPRDPRRAN
DSNKDPRIPHENSRDPRISEGSRDPRISSENVRDPRLGSEISSNNIKPTKQSDTQVTSSR
DPRIVAKEREKDKLKEQRKSKKDSPTKTKKEKDIKPTKIDSRSSRSAHREKEKEKEKEKE
KEKKEKETSVSSSRSSSSHTKKPPEPVPPTEEAENTASFKSSRKSKRRTYKPREDSPEEA
TSPSSSGKRSRADRDSDSDDSDHYQANKPNPALYNKKAKKPEVSSPTTTTAPATIGDTDY
RQFTSPPKRPATTTTDENVSPPKKDCIMDEESPEAEQGLGLFSKKDVDYRQLLPRPALLP
TPVGPAFNITDQDDRNPNSRDPSVRDPSARDPLAPINPSDNQDPNIARAKGELGPPGVGS
PLMGPIDPRMRKPSFNSPHAASWEKFREKNPEFKEYQRQASTSDSERRFSQEGEDVEPPF
FENHHGFSNHGRNFRGRGRGHRGMGIAGNIGDGRRKLYEEDEDSPGSPGRGEAARQNYQV
IVKQAEEQMRRGEINLSQYNQLLTTVVTLVEQDKIREAQYRDRRHHRTPSHFPDDGDWTG
PSEGPLSGPTSAPPTSGSGPRQRPGPVLGSGSGSGPGSGPSSGPGSGPSTGPGPGPGPGP
GPGSGPVPGPGPGPGPGPGPGHGRGMRENHMRGGRGGYMGPNGPPSRGGLGGMGRGLPSG
RGGPPGGPDGEDGWGRGGMRGRGRRGRGGFIQDDRNWGYREGNLEDEWTGEADLPFVTEE
RLKAVARDSETRTIDIDKVPREIRTYGNTAVILLDWDDPRILTFGEGHCNIVFDEGQFVL
PMRIGEDYKEFTIAGETHRVKLGVPTKELMLDNRGYQCFFGGKPITVHLAGQPRTVRLDG
KPPNVNIGPVKNTDFVAGKIQLVIHARKVVPLYLDAKPQRFNIDGRPFIIKFVDSLRAVT
INDVRFPVEFGGLPISISVRGYRRFLRFTALPAGIIPGQVNIHGMESEGQKLSGVSGSPA
QDQFSGEERNMPVMKGPNRRSPPVGIPRKPPPTYPEKTKVAPHSTLGPDGVFLPQGPPPT
QRPIQGAPPQGPPPQGPPPVQPPQLGPTSGVLPLSNVNNQPSPQAIASLNDILSHPPPQV
GIPPNAVPGSYMTTQLPPAPNKASQPVPQMPLDLNSLLENLTRTGLISTKVQDKSKAKKE
EEQKKEEEEEEKEKEEYERIPVEFMFNSENLRKRRKWLIEVIYRGMQCSSCGLRYPPEQT
LQYSHHLDWHFRQNRRQQESTKKANTRKFYFSIQDWLQYEEIEDVEERVPSMFENEGVVE
TMESEEAEEPSVAVSSDSALGVCPTCHDTFSQFFHQETEEWRYYNAIQVDGINYHPACHQ
DTLRAEAAEREAEERLKEMERTEEEDKMEEEAGDKGASPDDAEKPEKTNTDVSKDSQPPT
EDKLPGMSLLSDLPIRIKEEPLDVEEYDVESDNQLSFPLDLNIKQEVKKEPEEQDEEDLI
DKEPEEDDESGLLRNESTDEPMWDTPAVSVNAAETDIASSIDGNTELSTPEATPAGGLVT
KIKFNVSKPTLNINNNINNENKKDDANETLNSSINDEADEFVPPPFTVDYDLKPAFRDVE
LEEQPMEARGIEISGLCSIM
NT seq
5643 nt
NT seq
+upstream
nt +downstream
nt
atgacggatttaccgacggatgtggaggtggcggaggagtatcgttcgtcgctggcagat
ctgacgatgaactcgaagcccatgataacgatgctgacgatgctggccgaggagaaccgc
tcacacgcggcggtcatcgtcggggtgatcgagaagcacatccagcaggcatcaccaaac
catagattgcctgttatgtatttaatcgactccataatgaagaatgttggtcgagagtat
ataaagttgtttgcacttaacattattacaaccttcagctgtgtttttgaaaaggtggat
gaaaggacacgtaaaaaattatatgagctaagacatacttggaatgaagtattccctaag
tctcgcttgtatggtctggatgtaaaaattcagtcaatagatccagcctggccattagct
acaggatcttctacaacatcccagggtgtcagcaaaccaaatatccatattaatcccaat
attattaagcctggtgtagtgaaaggatcgccatctttatcttcaactggtggacacaag
ggccagaaggaccttgagatcctcaagcgggaggagcagctcttggcacttgagcggcaa
aaactggaattggaaaagaagaaaattcttttggagcagagtcgccatcaaaagcaggaa
ataaaaccagccaaagtggaaccagagaagcctcctgtcaagccagcagaggacctaagt
atatccagtgaacgacgctctgaattccttcgcagttacaagataaagaaaaagacccag
aataaggaagaagtgcaggtgggcacaaccatccatgttgacccaaggcgtgttcatcag
gttctgccagtggttgcggcaactggaccagttgctccacgtgaccctagacgggcaaat
gatagcaacaaagatccaaggataccacatgaaaattccagggatcctagaatatctgaa
ggttctcgtgatccaagaatttctagtgaaaatgtcagggatccgagacttggttcagaa
atttcaagtaacaatataaaaccaaccaaacaaagtgatacacaagttacttcttcaaga
gatccaagaatagtagccaaggaacgtgagaaagataaattgaaagaacagagaaagagt
aagaaagattcaccaactaaaaccaaaaaagaaaaagatatcaagcctacaaagattgac
tcacgatcatctaggtcagctcatcgggaaaaagaaaaagagaaagaaaaggagaaagag
aaagagaagaaggagaaagaaacatcagtttcatcttcaaggtcaagctcaagccacaca
aagaaacccccagaacctgtaccacctacagaagaggcagagaatactgcctctttcaag
agcagccgtaaaagtaagagaagaacctataaaccccgtgaggatagtccagaggaagcc
acttcaccatccagcagtgggaagcgatcccgtgcagatcgagactcagattcagatgat
agtgaccattaccaggctaataaaccaaaccctgcattgtacaataagaaggctaagaag
ccagaagtcagcagccccaccacaacaacagctccagccaccattggtgacactgactac
cggcagtttacatcccctccaaaacgccctgccaccactaccactgacgaaaatgtttca
cccccaaagaaggattgtattatggatgaggagtctcctgaagcagagcaaggacttggg
ttgttcagcaagaaggatgttgactaccggcagctgctcccacggcctgccctccttccc
actcctgttggaccagcttttaatatcacagaccaggatgatcgaaacccaaacagcaga
gaccctagtgtcagagacccttcagcacgagatccactggctccaattaatccttcagat
aatcaagaccccaatattgcccgtgctaagggagagcttggacctccaggtgtgggcagc
cccctcatggggcccattgatccacgcatgagaaaacccagcttcaacagtccacatgcg
gcatcgtgggagaagtttagagaaaagaatcctgaattcaaagaataccaacggcaagct
agtacttcagactctgaacgacgcttcagtcaggaaggagaggatgtagagcccccattc
tttgaaaaccaccatggattctcaaaccatggcagaaactttcgaggcagagggagaggc
cacagaggcatgggcatagcaggcaatataggagatggtcgccgaaagctgtatgaagag
gatgaagatagtccaggatcaccaggaagaggagaagctgcaagacagaattatcaggta
atagtgaaacaagcagaagagcaaatgcgtcgaggtgagatcaatctcagtcaatacaac
cagctgctaaccactgttgtcactttggtggagcaagacaaaattcgtgaagcacagtac
agagacaggagacatcacagaacaccttcacatttcccagatgatggagattggacagga
ccaagtgagggtccgttgtcaggtcctacatctgcacctcccacctcagggtcagggcca
cgtcaaaggccagggccagtactaggctcaggctcaggctcaggtccaggttcaggacca
agttcaggaccaggttcagggccaagcacagggccagggccagggccagggcctggacca
ggcccaggatcaggacctgtaccaggtccagggccagggccaggtccaggtccaggtcct
ggacatggaaggggaatgcgggaaaatcacatgagaggtggccgaggaggttacatgggt
cccaatggacctccatcaagaggtggccttgggggtatgggacgaggccttccaagtgga
cggggtggtcctcctggagggccagatggggaagatggatggggcagaggaggcatgcga
ggacgaggaagaagagggagaggaggattcattcaagatgaccgcaattggggttacagg
gaaggaaaccttgaagatgaatggacaggtgaggcagatcttccattcgtcacagaagag
cggctaaaggctgtagctagggattcagagacaagaacaattgatattgacaaagtccca
agggaaatcagaacgtacggtaacacagctgtcatcctcttggattgggatgatccccgg
attctcacatttggagaaggtcactgtaacattgtatttgatgaaggccagtttgtatta
cccatgagaataggggaagactataaagaatttactattgctggagagacacaccgtgta
aaactaggtgtcccaacaaaagaacttatgttagataatagaggatatcagtgcttcttt
ggtggaaaaccaataactgtacatcttgcagggcagccaagaacggtgaggttagatggg
aaaccacctaatgtcaacataggacctgttaagaatacagattttgttgcagggaagatt
caactagtaatccatgctaggaaagttgttcccctttacttggacgctaagccacagcga
tttaatatagatggcaggccattcatcattaaatttgtggattctctaagagcagtcaca
attaatgacgtcaggttcccagttgagtttggaggattgccaatcagtatcagtgtacgt
ggctatagacgctttctacggttcactgctctgcctgctgggattataccaggacaagta
aacatacatggaatggaaagtgaaggacagaaattgtcaggtgtttctggcagcccagct
caagatcaattttcaggggaagagagaaacatgccagtcatgaaaggtcccaacagaagg
tcaccccctgttgggattcccaggaaacccccaccaacttatccagaaaaaacaaaggtg
gctccacattcaactcttggacctgatggagttttcctgcctcagggaccacctccaaca
cagaggccaatacagggagctccacctcaaggccctccaccacaaggtccccctcctgtg
caacctccacagcttggtcccacttctggagtgttaccattatctaatgtaaacaaccag
ccatccccacaggctattgcctcacttaatgatattctcagtcatccgccaccacaggtt
ggtattcctccaaatgcagttccaggttcatacatgacaacacagcttcctccagctcct
aataaggcctctcaaccagttcctcaaatgccacttgatctaaattctctgctggaaaac
ctcactcgcactggcctcatatcaacaaaagtacaagacaaatccaaagcaaagaaagag
gaagaacagaagaaagaagaggaggaagaggagaaagaaaaggaagagtatgagcgaatt
ccagttgaattcatgttcaactcggaaaatcttcgaaagaggcgaaagtggcttattgaa
gtgatctatcggggaatgcagtgttcatcttgtggccttcgttacccaccagagcaaaca
ctacagtattcccatcacttggactggcacttccgtcaaaacagacgccagcaagagtcc
acgaaaaaggcaaacaccagaaagttttacttctctattcaggactggctgcagtatgag
gaaattgaagatgttgaggaaagagtacctagtatgtttgaaaacgaaggagtggttgaa
accatggaatcggaggaagcagaggagccaagtgtggctgtgtcatctgattcagccctt
ggtgtttgtcctacctgccatgacactttctctcagttcttccaccaggaaactgaagag
tggagatactataatgctattcaagtagatggcattaattatcatccagcttgtcaccaa
gataccttgagggctgaggcagcagaacgtgaagcagaagaaagattgaaggaaatggag
aggacagaggaagaagataaaatggaggaagaagcaggtgacaaaggagcaagtcctgat
gatgcagaaaagcctgagaagaccaacactgatgtttcaaaggattctcagccaccaaca
gaagacaagttgccagggatgtcattactgtcagatctgcccatcagaatcaaagaagag
ccactggatgttgaggagtatgatgttgaaagtgataatcagctgtctttcccgctggac
ttgaatatcaaacaagaggtgaagaaagagcctgaagagcaagatgaggaagatctgatt
gataaggaacccgaggaagacgacgaaagcggcttgttgcgcaatgagagcactgatgag
cctatgtgggacacgcctgcagtttccgtcaatgctgcagagacggacattgccagttcc
attgatgggaatacagaactttcaaccccagaagccactccagctggtggcctcgtgaca
aaaatcaagttcaatgtgtcaaagccaactcttaatatcaacaataacataaataatgaa
aataaaaaggatgatgcaaatgaaactctcaactcaagcatcaatgatgaagcagatgaa
tttgtgcctcctccattcactgttgactatgatctcaagccagcttttagggatgttgag
ctagaagagcagcctatggaagctcgaggtattgagatatcaggattatgctcaattatg
taa
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