Penaeus monodon (black tiger shrimp): 119581905
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Entry
119581905 CDS
T08784
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(I) chain-like
KO
K19719
collagen type II alpha
Organism
pmoo
Penaeus monodon (black tiger shrimp)
Pathway
pmoo04512
ECM-receptor interaction
pmoo04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
pmoo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119581905
04518 Integrin signaling
119581905
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pmoo00536
]
119581905
Glycosaminoglycan binding proteins [BR:
pmoo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119581905
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
New_glue
Motif
Other DBs
NCBI-GeneID:
119581905
NCBI-ProteinID:
XP_037786000
LinkDB
All DBs
Position
2:complement(23685229..23705278)
Genome browser
AA seq
1547 aa
AA seq
DB search
MWRLPDPLRRPPLAAAATLLLLAAAALAEPEPEAKPQEYNYYDYDYYNYDDYEYGPDETY
DPYEAEATPDPYATPAPYDPYPEEEEPYDPYATPAPYDPYATPAPYDPYDPYATPSPYDP
YGRDPYEQTEPPTTTTTTTTTTTTTTTTPPPPPPPTPRRDLDYERRASRPRRPKGQRPDR
RPTEEEPTEIVGPTQPDPNRGSVGAAGAPGERGPTGSPGTPGIPGDPGPPGPMPDITPWI
SQLSQSQGGEKGPALSYELQAQVGPIGPRGPAGNPGPAGPQGFQGMRGEPGDPGPSGSTG
PPGPRGLPGIPGKDGENGDDGAAGPPGAVGPPGPRGLPGMPGLPGVKGHRGFPGLDGAKG
EQGSSGDKGASGPPGQPGPIGPMGAAGPRGERGREGPPGPPGLRGIDGIAGPPGPPGGPG
KPGPPGFPGSAGAKGDQGVQGPKGSQGLQGPRGEAGKPGIPGEAGPQGPSGKDGLVGEKG
APGTQGDAGPPGFPGARGPPGLPGSPGVPGAKGERGLTGERGFKGEFGMKGEGGTPGPRG
LPGPPGSPGKRGKRGMVGPAGGLGPQGERGPPGGRGLPGADGPPGPKGQSGDPGPPGNLG
QKGREGNPGPSGMPGRRGLRGPGGLSGPPGKTGRPGERGAPGADGKPGDQGPQGIQGLPG
PMGMPGAQGQIGETGKEGSPGETGPTGPRGDPGKDGSAGPIGQPGPTGPAGERGPPGPPG
ARGFQGLPGAPGSDGTAGKDGEAGLQGPRGLPGGPGLRGTRGFPGERGAQGPPGENGARG
EPGLPGPDGPAGPPGPSGQKGHAGPSGLVGLPGGRGAVGLPGEKGERGGIGRAGPEGPPG
RQGDQGPQGVMGPPGPPGEPAEKGDPGPPGPPGEAGANGMMGERGPQGQQGIQGFPGPLG
PPGVGGPKGQRGLPGQKGSQGNPGPVGQPGPTGSQGLPGLNGAKGQRGESGQRGEPGLMG
PPGRPGTAGTPGSAGEPGPPGLAGNPGIKGSPGDTGRPGLPGPSGQPGAPGPEGPKGEAG
PQGRIGQVGKPGPPGPSGERGLPGLPGPPGPPGLRGQTGARGEPGAEGKRGAEGPVGPPG
LTGPPGAIGPTGDTGAPGSDGKPGPPGISGRTGDKGPPGSPGQTGSPGPTGLPGPPGPAG
PIGPTGERGDRGETGPQGVEGPSGPRGKPGAPGVQGEKGDTGATGPKGAKGHRGLIGLQG
LPGPSGPSGDKGVPGVAGPPGPAGEPGPKGPPGRDGGIGLQGIMGPPGPRGPSGEDGSSG
APGPPGPAGPPGPPGESMGYDAVTLAAILNRDQTKGPDPLQGDDSEIPARLFGKEITDDE
RRDLITKAYEQLKTSFKKFLKPEGTKESPAKTCRDLAYAHPELPSGEYFIDPNEGDVKDA
IVVHCDMEEKASCVLPKPGMTEEFNWRGRSRGLTWLGEEISPGFEFTYKADNNQLSFLQL
LSSSASQEITYHCKNSIAVFDASKRSFRNALRLMTISDTELNARGNNKFRYRVVEDGCKT
KSSSWSATKIRYRTDKPQRLPFVDIGLRDVGEEGQSFKIEVGPVCYS
NT seq
4644 nt
NT seq
+upstream
nt +downstream
nt
atgtggcggctccccgaccccctgaggcggcccccgctggccgccgcggccaccttgctc
ctgctggctgccgcagctctcgcagaaccggaacctgaagccaagccccaagaatacaac
tactacgattacgattattataattacgacgattatgaatatggacccgatgaaacatat
gacccttatgaggcggaggcgacacccgacccctatgccacgccggccccgtatgacccc
taccctgaggaggaggaaccttacgatccttacgccacgccggcgccctatgacccttat
gccacgccggcgccctatgacccctacgacccctatgccacaccgtcgccgtatgaccca
tacgggcgcgatccctatgaacaaactgaacccccaaccactaccactaccacgaccact
actaccacaaccaccacaaccacacctccgcctccgccaccgccaacgccgagacgggat
ctggattacgagagaagagcgtcccggccgcgacggccaaagggccagcgcccagatcgc
cggccgacggaagaagaaccaacggaaatcgtgggcccaactcagccagaccccaacaga
ggctcagtaggcgctgcaggagctccaggtgaacgaggtcctactggaagtccgggcacc
cctggcattcccggcgaccctggccctcctggacctatgcccgacatcacaccatggata
tctcagctctcgcagtctcaaggcggagagaaaggaccagccctttcctatgaattgcag
gctcaagtcggtcccatcggcccgagaggtcccgcaggtaaccccggtcccgccggtcct
cagggtttccagggtatgcgaggcgaaccaggtgatcccggaccttccggctcaaccggt
ccacctggtccacgcggtctccctggtattcctggaaaagacggagagaacggcgacgat
ggagctgcaggtcccccaggcgctgttggcccccctgggcctcgcggtctccccggaatg
cctggcctccctggcgtgaagggccaccgtggcttccctggtctcgacggtgccaagggt
gaacagggatcgtctggagacaagggagcctccggtcctcctggacagcctggtcctatc
ggccccatgggtgctgccggtcctcgaggtgaacgtggtcgggaaggtccccctggacct
cctggtctgcgtggtattgatggcattgcaggtcccccaggcccccccggtggccccggt
aagcccggtccccccggcttccctggtagcgctggcgccaagggtgaccagggtgtgcaa
ggccccaagggatcacaaggtcttcaaggtccacgaggcgaggctggtaaacccggcatc
cccggagaggcaggcccccagggaccctcgggcaaagacggacttgtcggagaaaaggga
gctcctggaacccagggagatgctggtccccccggtttccccggagctcgaggtccccct
ggccttcctggcagtcccggtgttcctggcgccaagggcgaaaggggtctgactggcgaa
cgaggcttcaagggagagttcggcatgaagggcgaaggaggaaccccaggcccccgaggc
ctccccggcccccccggctcccccggcaagagaggcaagagaggcatggtcggtcctgct
ggaggcttgggccctcagggagaacgaggaccccctggaggccgaggtctcccaggagct
gacggaccccctggacccaagggccaaagcggcgaccccggaccccctggaaaccttgga
cagaagggtcgcgaaggaaaccctggtccttctggcatgcctggtcgacgcggtctgcga
ggccctggaggactttcaggtccccctggcaagacaggacgacccggcgagcgaggtgcc
cccggcgctgacggcaaacctggcgaccaaggaccccagggcattcagggtctcccaggc
cctatgggaatgccaggagcacaaggacagatcggcgaaacaggaaaggaaggctcccct
ggagaaaccggtcccaccggccctcgaggtgaccctggcaaggatggatcagctggaccc
atcggtcagcccggacccaccggtcctgccggcgagcgcggtccccctggtccccctggc
gcccgcggattccaaggcctccctggcgcccctggaagtgacggcacggccggtaaggac
ggagaggcgggtctgcaagggcctcgtggtcttcctggcggccctggcctgcgcggtact
cgaggcttcccaggagagcgaggagctcaaggtccacccggagagaacggagcccgaggc
gagcctggtcttcctggccccgacggaccagcaggtccaccaggtccatctggccaaaag
ggtcatgccggtccatctggtcttgttggtcttcctggcggtcgcggtgcagttggtctg
cccggagagaaaggagagaggggaggcattggaagagccggtcctgaaggtcccccaggt
cgccaaggtgaccaaggtcctcagggtgtcatgggtcccccaggtccacctggagagcca
gcagaaaagggagacccaggtccaccaggtcctcctggcgaggccggtgcaaatggcatg
atgggcgagagaggtcctcagggccagcagggtatccagggcttcccaggtcctcttgga
cctcctggcgttggaggaccgaagggccagcgtggtcttcccggacagaagggatcgcaa
ggaaatcctggaccagtgggccagcccggccccaccggttcccagggtctgcccggcctc
aacggtgccaagggacaacgcggagagagcggccaacgaggcgaacctggtctcatgggt
ccacctgggcgacctggcaccgccggtactcctggatctgcaggagaaccgggtccacct
ggtctggctggcaaccctggcatcaagggctctcctggagacacaggacgccctggcctt
ccaggtccatctggtcagcctggtgcccctggacccgagggtcccaagggtgaggccggt
ccccagggccgtattggtcaagttggaaagcctggtcctcctggaccttcaggagaacgt
ggccttcctggtctacctggcccacctggcccacctggtctccgtggacaaaccggtgct
cggggagaacctggtgcagaaggaaagcgtggcgctgaaggtcccgtcggcccacctggt
ctcactggtccccccggcgccatcggcccgaccggcgacactggcgcccctggttcagat
ggcaagcccggaccgcccggtatctctggacgcacaggtgacaaaggaccacccggatcc
cctggacaaactggcagccctggaccgactggcctacctggacctcctggcccggccgga
cctattggcccaacgggagaacgaggagaccgcggagaaactggacctcagggcgtggag
ggaccttctggccctcggggcaagcctggcgcacctggcgttcagggcgagaagggagac
actggtgcaacaggaccgaaaggagccaagggtcaccgtggtcttattggtctccagggt
ctgcctggtccatctggtccttctggtgacaaaggtgttcctggtgttgctggtccccct
ggtcccgctggtgagcctggtcccaaaggtccacctggacgcgatggaggcattggtctc
cagggtattatgggtcctcccggtccccgtggtccttctggcgaagacggatcttcaggt
gccccaggtcctcctggtcctgctggtccgcctggtcctcctggtgaatccatgggttat
gacgcagtcaccttggcggccatcctcaaccgggaccagaccaagggacctgacccgctg
cagggagatgactccgaaatcccggcccgcctcttcggcaaggagatcacggacgacgag
cgccgcgacttgatcaccaaggcctacgaacagctcaagacctccttcaagaagttcctg
aaaccggaaggcactaaggagtctcctgcaaagacctgccgcgatctcgcatatgcccat
ccagagctgccaagtggcgaatacttcatcgatcccaatgagggtgacgtcaaggacgcc
atcgtggtgcactgcgacatggaagagaaggcatcgtgtgtgctgcctaagcctggcatg
acggaagagttcaactggcgcggcagaagtcgaggcctcacctggcttggagaggaaatc
agcccaggcttcgagttcacttacaaggcggacaacaaccaactgtccttcctgcagctg
ctgtcatcatccgcctcccaggaaatcacgtaccactgcaagaattccatcgccgtcttc
gatgcttccaagaggagtttccgcaacgcccttcgactcatgaccatctcagacaccgaa
cttaacgccagaggaaacaacaagttcagatatcgagtggtcgaggacggttgtaagact
aaatcgagcagctggtccgccaccaagattcgttaccgcacagacaaacctcagcggctg
cccttcgtggacatcggtctcagagacgtcggtgaagagggccaatcgtttaagatcgaa
gtcggaccggtatgttattcgtaa
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integrated database retrieval system
