Penaeus monodon (black tiger shrimp): 119582027
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Entry
119582027 CDS
T08784
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
pmoo
Penaeus monodon (black tiger shrimp)
Pathway
pmoo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmoo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119582027
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pmoo03041
]
119582027
Enzymes [BR:
pmoo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
119582027
Spliceosome [BR:
pmoo03041
]
Complex A
U2 snRNP components
U2 related factors
119582027
Complex B
119582027
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
S4
DUF1062
Motif
Other DBs
NCBI-GeneID:
119582027
NCBI-ProteinID:
XP_037786165
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All DBs
Position
15:38961416..38970113
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AA seq
984 aa
AA seq
DB search
MWRLCNHFVCRVRGSPLIARNILQRSSLLPCAPARTYSSVCSGVFGYGSLSRHSVLGPEQ
GRVQGHLGSSVACPSRLKSSKSNKRRNRSQDFSDDEESDEEGELESAADFRDMRVNVSSL
RLDAILKAGLNISRNKVESAFYNSKIRVNGQKVVKKSKQLQEEDEVDPLDAFMSGIQEEV
RKINRVDMRGGVMKSTKPISVGTGEAGAKKPVIIMGVAKKVDAKKKGELMEQNQDALEYS
SEEEGEDLKDTMASINSKGKKELVKIDHTAVEYVPFRKDFYVEVPEIANMTKEEVDAYRA
ELEGIKIKGQGCPKPIKTWAQCGVSKRILEILKKCNYEKPTPIQVQAIPAIMKGRDVIGI
AKTGSGKTLAFLLPMFRHIVDQPPLEDTDGPIAIIMTPTRELCMQIGKECKKFAKNNLRV
CCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFD
LGFEPQVMRIIDNIQPGRQTVMFSATFPRQVEALAKKILTKPIEITVGGRSIVCKDVTQE
VVMIEEDQKFLKLLEILGKFYEKGQTLIFVDKQESADSLFKDLLSHSYRALVLHGGVDQI
DRDSTILDFKAGRVPIMVATSVAARGLDVKQLILVVNFDCPNHYEDYVHRCGRTGRAGNK
GWAFTFITNDQPKFAGEVIRAMELSDTPVPEEIKKFYEEYKQKMEGEGKKVKTGGGFHGK
GYKFDESEANFASEKKKFEKAALGLADSDDEDIEQDIDQQIESMLNTKRTVKEIKVTPMV
AQSTGSTTTTSIPVGGPSASDKLELARKLAQRINLQHNIGKEAKGASQQAAEFILKGGAT
MQPTISAKTVAEQMAQKLNNKLNYQPRDDREEEEEATEETHHKYEEELEINDFPQQARWR
VTSKEALAQISEYSEAGITVRGTFCPPGKNPPEGERKLFLAIESTSELAVSKAKAEIIRL
IREELVKLRTSAGPVKAQGRYKVL
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atgtggagactctgcaatcacttcgtctgcagagtgagaggctctcctttaatcgccaga
aatatcctgcagagatcatcactcctaccctgtgccccggccaggacttactctagtgtc
tgctccggagtcttcggatatgggtccttgtcgaggcactctgtccttggcccagagcag
ggcagagtccaggggcacttgggtagcagtgtggcttgtccatcacgcctcaagtccagc
aagtcaaacaagagaaggaacagaagccaagacttttcagatgatgaagagtcagatgag
gaaggagagttagaatcagcagcagacttccgtgatatgagagtgaatgtctcatccttg
agactggatgccatcctcaaggctgggcttaacatttcacgcaacaaagtggagtctgct
ttttacaacagcaagattcgtgtaaatggtcaaaaagtggtgaaaaagagtaagcagctt
caagaggaggatgaagttgatcctcttgatgccttcatgtcaggaattcaagaagaagtg
agaaaaatcaatcgggttgatatgcgaggaggtgttatgaagtccaccaagcccatttca
gtgggcacaggggaagcgggagcaaagaaacctgtcatcatcatgggtgtggccaagaaa
gtggatgccaaaaagaagggtgagctgatggagcagaaccaagatgcgctagagtattca
tcagaggaagaaggagaggacctcaaggataccatggctagcatcaactctaaaggcaaa
aaggaactagtgaagattgaccatacagcagttgagtatgttcctttcagaaaggacttt
tatgtggaggttcctgagattgccaacatgacaaaagaggaggtggatgcttacagagcg
gagctagaaggcattaagatcaagggtcagggatgccccaaacccatcaagacatgggct
cagtgtggggtcagtaagcgaatcttggagatattgaagaagtgtaattatgagaaacca
acacctattcaagttcaggccattcctgcaatcatgaaaggcagggatgtgattggcatt
gccaagacagggtcagggaagaccctagccttccttctgcctatgttccgccacatcgtg
gaccagcctcccctcgaggacacagacggacccatagccatcatcatgaccccgacaagg
gagctatgcatgcagataggaaaggaatgcaaaaagtttgcaaagaacaatctgagagtt
tgctgtgtatatggaggcacaggaatttcagaacaaattgctgagctgaaacgtggggca
gaaatcattgtctgcactcctggccggatgattgatatgttagcagcaaacagtggcaga
gtgaccaaccttcggagagtgacatatgttgtccttgatgaggcagatcgcatgtttgat
ctaggttttgaaccacaggtcatgagaataatagataatattcaaccaggccggcagacg
gttatgttctctgccactttcccgaggcaagtggaggcactggccaagaagattctcacc
aagcctattgagatcacggtcggaggaaggtccatcgtctgcaaagatgtaacacaggag
gtggtcatgattgaggaggaccagaagttcctgaagcttttggagatcctggggaagttc
tatgagaaaggccagacgcttatcttcgtggacaagcaggagagtgcggattcattgttt
aaggatctccttagtcactcgtatcgtgcccttgtacttcatggaggtgttgatcagatt
gacagagacagcacaatcctagacttcaaggcaggaagggtgcctatcatggtagcaacc
tctgtggcagcaagaggtctagatgtaaaacaacttattttggttgttaactttgactgc
ccaaatcattatgaagactatgttcatagatgtggtcgaactggtcgggcaggtaacaag
ggatgggcctttacttttattacaaatgaccagcctaaatttgcgggagaagttatacgt
gccatggagctgtccgacacacctgtacctgaggaaataaagaaattctacgaggagtac
aagcagaagatggaaggagaggggaaaaaggtaaagacagggggtggcttccatggcaag
ggatacaagttcgacgagtctgaggccaactttgcgtcagagaaaaagaagttcgagaag
gctgcgctgggtctggccgactccgatgacgaggatattgagcaggacattgaccagcag
attgagagcatgttgaacaccaagaggactgtcaaggagattaaagtgacaccaatggta
gcacagtccacaggcagcacaaccacaacaagcattcctgttggtggtccctctgcctcg
gacaagctggagctggcacggaaattagctcagcgcattaacctgcagcacaacatcggc
aaggaggctaagggagcaagtcagcaggcagcagagttcatccttaagggaggagcaaca
atgcagcccaccatctctgctaaaacagtggctgagcaaatggcccagaaactgaataac
aagctgaactaccagcctcgtgatgaccgtgaagaggaggaagaagccacagaagaaaca
caccacaagtatgaggaggagttggagatcaatgatttcccccagcaggctaggtggaga
gtgaccagcaaagaggccttggcccagatatccgagtattccgaagctggaatcactgtc
agaggaaccttctgccctccgggtaagaacccaccagagggtgaacgcaaactgttcctg
gccattgagtccacctcagagctggcagtgtctaaggccaaagctgagatcatccgctta
atccgcgaggaactggtgaagctgaggacgagtgcaggaccagtgaaagcacaaggaaga
tacaaagttttgtaa
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