Penaeus monodon (black tiger shrimp): 119584324
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Entry
119584324 CDS
T08784
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-processing factor 6-like
KO
K12855
pre-mRNA-processing factor 6
Organism
pmoo
Penaeus monodon (black tiger shrimp)
Pathway
pmoo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmoo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119584324
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pmoo03041
]
119584324
Spliceosome [BR:
pmoo03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
119584324
Complex C
U5 SnRNP specific factors
119584324
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_14
PRP1_N
TPR_19
Suf
TPR_16
HAT_PRP39_N
TPR_17
TPR_2
HAT_PRP39_C
HAT_Syf1_CNRKL1_C
HAT_Syf1_CNRKL1_N
TPR_8
TPR_15
TPR_1
ARM_TT21_2nd
UTP6_C
TPR_21
NatA_aux_su
ChAPs
Fis1_TPR_C
fn2
Motif
Other DBs
NCBI-GeneID:
119584324
NCBI-ProteinID:
XP_037788807
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All DBs
Position
2:complement(58510511..58516973)
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AA seq
933 aa
AA seq
DB search
MAAPPAALLNKNKKNFIGMPAPLGYVAGVGRGATGFTTRSDIGPARDANDVSDDRHAPPS
KRKKKEEEDDEDLNDANYDEFNGYGGSLCSKDPYDKDDEEADAIYDEIDKRMDEKRREYR
EQRLKAELENYRQERPKIQQMFSDLKRELAHVSEGEWSTIPEVGDARNRKQRNPRDERFT
PLPDSVLSHNLGGENVTTIDPGSGLASMMPGTTXPGMLTPSGDLDLRKIGQARNTLMGMR
LNQVSDAVGGQTVVDPKGYLTDLQSMIPQYGGDINDVKKARLLLKSVRETNPNHPPAWIA
SARLEEVTGKIQSARNLVMKGCEMCPKSEDVWLEAARLQPPDMARAVIAQAVQTLPYSPR
IWIKAADLELELKAKKRVYRKALEQIPNSELLWKLAVELEDEEDAKILLSRAVECCPTSV
DLWLALARLENYENARKVLNKARENNPKDRQIWITAAKLEEANGNNTLVGKIIERAISTL
QANMVDINRDFWIKDAMEAEHAGAVLTCQAIIKNIIGYGVEDEDRKHTWMEDADACASQG
AIECARAIYSHALSVYPKKKSVWLAAAHFERSSGTRESLETLLQQAVTHCPQEETLWLMG
AKSKWLAGDVPAARSILALAFKANPNSEEIWLAAVKLESENNEYERARRLLAKARSQAAT
SKVMMKSAHLEWALGNLELAKNLLDEGIKEFGDFAKLWMMKGQILEQQGQKDKAWEVYRD
AVKRCPSSIPLWRLLSSLEEKQGKLVTARATLEKSRVRNPMNDELWLLAIRLELRASQRE
VSRALMARALQECPTSGNLWAQAIFLEDPAQRKSRSVDALKRCQDDAHVVLAVAKMFWME
GRKNKAREWFNKTVKIDPDLGDAWAWYYKMETLFGTPEQKEEVMKRCLAADPRHGEHWCA
TSKLIDNWRKKTQEILQLVADKLPIPVMNRETY
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atggcagcaccaccagcagcactgttaaataagaacaaaaagaacttcataggcatgcca
gcgcctttgggatacgtggctggtgtggggagaggagccactggcttcaccacgcgttcc
gatattggtcctgctcgcgatgccaatgatgtgtcagacgaccgccatgcgccacctagt
aaacggaagaaaaaagaggaagaggatgacgaagatcttaatgatgctaactatgacgag
ttcaacggttatggaggatcactatgtagtaaagatccgtacgacaaagatgacgaagag
gcagatgcaatctacgacgaaattgacaagcgtatggatgaaaagcggagggagtaccgc
gagcagcgcctcaaagcagaactggagaactaccgtcaggagcgccccaagatccagcag
atgttttccgatctcaagagagagttggcacatgtgagcgagggcgaatggagtaccatc
ccggaggttggtgatgcccggaacagaaagcaacgcaaccccagggatgagaggtttacc
ccactgccagacagtgtactctctcacaaccttgggggagagaatgtgacaactattgac
ccaggctcaggcctggcctccatgatgcctgggacgacanctccaggcatgttaacacca
agtggtgatcttgatttgcgtaaaattggacaggctcgtaacacactgatgggcatgagg
ctgaaccaggtctctgatgctgtaggtggtcagacagtggttgaccccaagggatatctc
actgacttgcagagtatgattccacagtatggtggagacatcaatgatgtcaagaaggcc
agactcctcctgaagtcagttagggaaaccaaccccaaccatccccctgcgtggattgca
tctgcacgtctcgaagaggtcacgggtaaaatccagagtgccaggaatttggtgatgaaa
ggttgtgagatgtgccccaagtctgaggatgtctggctagaagcagctcgactccagcca
ccagatatggctcgtgctgtcattgctcaggctgtccagaccctgccatactcacccaga
atctggatcaaggctgccgatcttgagttggaactaaaggcaaaaaagagggtgtacaga
aaggccctggagcagattcccaattcagaactgctgtggaaactagctgtcgaattggaa
gatgaggaggatgcaaagattctccttagtcgagctgtggagtgctgcccaacttctgtt
gacctctggctagctttggctcgcttggaaaactatgaaaatgcaaggaaggtgttgaac
aaagcccgtgagaataatcctaaggatcgtcagatttggatcacagccgcaaagctggaa
gaagccaatggtaacaacacactggttggaaagattattgagcgtgccatttcgacactg
caggccaacatggtggacatcaatcgagatttctggatcaaggatgccatggaggctgag
catgctggagctgtcctcacctgccaggccatcataaagaatatcattggctatggggtt
gaggatgaggatcgcaaacatacatggatggaggatgcggatgcctgtgcaagccaagga
gccattgagtgtgcaagagccatatacagtcatgccctgtctgtttatccaaagaagaag
tctgtatggttagcagcagcacactttgagcgcagcagtgggacgagagagtccttggag
actctgctacagcaggctgttactcactgccctcaggaagaaaccctttggcttatggga
gccaagtccaagtggctggctggtgatgttcctgctgcaagatcaattctggcacttgct
ttcaaagcaaatccaaattcagaagaaatttggttggctgctgttaagctagagtctgag
aataatgaatatgagagagcaagaagactcctagcaaaggcccgttcccaggcagctacc
tcgaaggtgatgatgaagtctgctcaccttgagtgggctctggggaacctggaacttgcg
aagaatctccttgatgaaggaataaaggaatttggagactttgcaaagctgtggatgatg
aagggccagatcttagaacagcagggccaaaaagacaaagcatgggaggtgtacagagat
gcagtcaagaggtgtccctcctctattcctctgtggcggcttttgtcttccttggaggag
aagcaagggaagttggtaacagcgcgtgctactctggagaagtcgagagtccggaatccc
atgaacgacgagctgtggttgttggccatccgcttggaactccgagctagtcagcgtgag
gtcagtagagcactcatggcacgtgctttgcaggagtgccccacatccggtaacttgtgg
gcacaggccattttccttgaagatccagcccagaggaaatcccgcagtgttgatgccctg
aagagatgccaagacgacgcccatgtcgttctggctgttgctaaaatgttctggatggag
ggcagaaagaacaaagctcgtgagtggttcaacaagacagtcaaaatcgatccagatctc
ggtgatgcctgggcatggtactacaaaatggaaaccttattcggaacaccagagcaaaag
gaagaggtcatgaagagatgcctggcggctgaccctagacacggtgaacattggtgcgca
acctcaaagctcattgacaattggaggaagaagacgcaggaaattctccagctggttgct
gacaaattacccattcctgttatgaatagagagacttattag
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