Penaeus monodon (black tiger shrimp): 119585727
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Entry
119585727 CDS
T08784
Name
(RefSeq) protein CLP1 homolog
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
pmoo
Penaeus monodon (black tiger shrimp)
Pathway
pmoo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pmoo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
119585727
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmoo03019
]
119585727
Enzymes [BR:
pmoo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
119585727
Messenger RNA biogenesis [BR:
pmoo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
119585727
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
CbiA
MMR_HSR1
ATP_bind_1
AAA_16
CTV_P13
AAA_10
nSTAND3
AAA_24
Motif
Other DBs
NCBI-GeneID:
119585727
NCBI-ProteinID:
XP_037790346
LinkDB
All DBs
Position
20:complement(24720694..24728577)
Genome browser
AA seq
420 aa
AA seq
DB search
MSEKEFRLDPDSELRFEVEGKQDTVDLTLVNGKAEVFGTELAPDKPYTFFPGAKVAVFTW
HGCVLKLSGPTEGTYVAKETPMVMYLNTHACLERLRRHADEGLSRGEDTRGPVTMVVGPG
DVGKSTLCRILLNYAVRMGRRPIFVDLDIGQGSIAIPGTIGALLVERAADVGEGFSQEAP
LVYNFGHLSPASNMTLYNILVSRMAATIQDKMVGNRKVAASGVVINTCGWIKNEGYKSLT
HVAQAFEVDVIIVLDQERLYNELVRDIPFIRVVFLPKSGGVVERTQSMRASARDDRIREY
YYGLRTKYHPHSFEVKMSTLQIYKIGAPALPDSCMPADMKVDDHMTKLVPVEPSVKLKHH
MLAVSLATEPEDLLTSNVAGFICVLDVDEDLKVMKVLSPQPKPLPKTILILTEIQFMDSS
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaaaggagttccgtttggacccagacagcgaactcaggtttgaggttgagggc
aagcaggatacagttgatctcacattggtaaatggcaaagctgaagtgtttggcacagaa
ctagcaccagataagccgtacaccttcttccctggagcaaaagtagcagtgttcacctgg
catggctgtgttctcaagctgtctggcccaacagagggaacatatgtggcaaaggaaacc
ccaatggttatgtaccttaatacacatgcatgcttggagcggttgcgcaggcatgcagat
gaaggtcttagccgaggagaggataccagaggaccagtaaccatggttgttggtccagga
gatgtaggaaagtcaactctgtgcagaattctcctcaactatgctgtgcggatgggacgt
cggcccatctttgtagatttggatattggacaaggatccattgcaattccaggaactata
ggtgcactgcttgttgagagagctgctgatgttggggaaggcttttctcaggaggctcct
cttgtgtacaactttgggcacctgagtcctgcatccaacatgactctgtacaacatcctt
gtctcacgcatggctgccaccattcaagataagatggttggcaatagaaaagttgctgcc
tcaggggtggttatcaacacatgtggctggattaaaaatgaaggttacaagagtctgaca
catgttgcgcaggcctttgaggttgacgtgatcattgtccttgaccaggagagactatat
aatgaactcgtcagagatattcccttcattagggttgttttcttgcccaagagtggaggt
gtggtagagagaactcaatccatgagggcatctgctcgtgatgaccgcatcagagaatac
tactatggactgcgcaccaagtaccacccacacagttttgaggtgaagatgagcacgctc
cagatatacaagattggtgctccagccctcccagattcctgcatgcctgctgatatgaag
gtggatgatcacatgaccaaacttgtgcctgtagagcctagtgtaaagttaaagcatcac
atgttggctgtaagtcttgcaacagaacccgaggacctcttgacctccaatgtcgctgga
tttatttgcgtacttgacgttgatgaagacctcaaagtcatgaaggtcttgtctccacaa
ccaaagccactcccaaaaacaattttgattttgacagaaattcagttcatggactcatcg
taa
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