Penaeus monodon (black tiger shrimp): 119587201
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Entry
119587201 CDS
T08784
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pmoo
Penaeus monodon (black tiger shrimp)
Pathway
pmoo03013
Nucleocytoplasmic transport
pmoo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pmoo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
119587201
03015 mRNA surveillance pathway
119587201
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmoo03019
]
119587201
Enzymes [BR:
pmoo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
119587201
5.6.2.5 RNA 5'-3' helicase
119587201
Messenger RNA biogenesis [BR:
pmoo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
119587201
mRNA cycle factors
Common to processing body (P body) and stress granule
119587201
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
DEAD
SLFN-g3_helicase
UvrD-helicase
Helicase_RecD
ATPase
NPHP3_N
AAA_16
AAA_22
nSTAND3
SRP54
AAA_32
Motif
Other DBs
NCBI-GeneID:
119587201
NCBI-ProteinID:
XP_037791894
LinkDB
All DBs
Position
22:44822905..44830543
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AA seq
1214 aa
AA seq
DB search
MTYRIKSSINLVRHVAQGVRTPAIPHSDALLSPTRFPGSGFPPPIRYHGSRHGSSGRNIR
AEEELKFSQITQSTPRISHEVKGEMSVDAYGPSSQSLTFYDTEEADLLGADTQGSEYEFN
LTLGSQTQTQTQTQTQTHTQADLDKTQASQSQVTVNGDVVESQLEKVTEAVADLQFEEEE
EESAFYTKELPEWACRYCGIHDPASVVMCNVCHKWFCNGRGNTSGSHIINHLVRAKHKEV
SLHKDGLVRDTVLECYACAVKNVFVLGFIPAKAESVVVLLCRQPCAAQSSLRDMNWDPEQ
WKPLISDRALLPWLVRVPSEAEQLRARQITAQQINKLEELWKENASATFDDLERPGVDEE
PQQVCLRYEDGFQYQNIFGPLVKLEADYDKKLKESQTQDKIEVRWDIGLNKKICAYFTLA
KTDGDMRLMHGDELRLRYLGDLHKPWSGVGHVIKIPDNFGEEVGIELKSNVGVPTDCRDK
FVVDFVWKSTSFDRMQAALRKFAVDDSSVSPYIYHRLLGHVEVDELLFRHIYLPKQLSAP
NLPTLNNSQQYALKHALQRPLSLIQGPPGTGKTVTSATIVYQLVKQTGGSVLVCAPSNTA
VDQLTEKIHKTGLKVVRLCAKSREAIDSPVSFLALHNQIRNLEDNGELQKLQQLKEETGE
LSSADEKRFRMLKKQAEKTLLEAADVICCTCVGAGDPRLARLKFHSILIDESMQATEPEC
MVPVVLGAKQVILVGDHCQLGPVVMCKKASRAGLSQSLFERLVVLGIRPFRLTVQYRMHP
QLAQFPSNFFYEGSLQNGVVDADRTMKGVSFPWPQQDKPQFFYVTSGQEEIAGSGTSYLN
RTEASSVEKLVTRFLNSGVKPEQIGVITPYEGQRAYLVQYMQYQGPLNQKLYQRLEVASV
DAFQGREKDIIIMSCVRSNEHQGIGFLSDPRRLNVALTRARYGIIIVGNPKVLSKQGLWN
HLLHHFKEKKVLVEGPLNNLKESMMQFSKPKRLINATNPGSHFMNTAMYDAREAMVPGSM
YDRSGQLNGSAPPPSQCFRGPQYDMYGRAHDSLDYISADHSQPGLNNLPVPVGMFMNMAH
VPPRFYQQHQQALAQARGGRGGARGGRTGGRKPNKNMGGSNALQLSQPFSQDPTTQSYSQ
PGLTQGHLSQGMSGPGLSGLSQGGLSQAELSQDSYMVDQFQSQTDGLLSQDSTYQGDRAF
FTPASQTHHFSQPY
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atgacctatagaatcaagtcatctataaacctcgtccgccacgtagcccaaggagttcga
acccccgcgatcccccacagcgatgctcttttgtcacccaccaggtttcccggctcaggg
tttcccccgcctattcgctatcatggttcccgacatggttcttcgggaagaaacattcga
gcggaagaagagttgaaattcagtcaaattactcagtcaactccgcggatttcccacgag
gtcaagggcgagatgagcgtggacgcgtacggcccgagttctcagagcctgaccttctac
gacaccgaagaggccgacctcctcggggctgacactcaaggctccgagtacgagttcaat
ctcaccctcggcagccagactcagactcagactcagacccagactcagacgcacacgcag
gctgatttggataagactcaggcttcgcagagtcaggtgacagtgaatggagatgtggtc
gagtcacagctagagaaagttacagaggcagttgctgacctgcagtttgaggaggaagag
gaggaatctgctttttataccaaggagctgccagaatgggcctgccggtactgtggtatc
cacgacccagcctcggtggtcatgtgcaatgtgtgccacaagtggttctgcaatggacga
ggaaatacctctggttcccacattatcaaccacctggtcagagccaagcacaaggaggtt
agcctacataaggatgggttggtgcgagacacggtgctggaatgctatgcttgtgccgtc
aaaaatgtgtttgtccttggctttatcccggccaaggcagaatcagtggtggtgctgttg
tgccgtcaaccctgtgcagcacagagctccttgagggacatgaattgggatccagagcag
tggaagccactcatcagtgacagagctcttctgccgtggctggtacgtgttccatctgaa
gctgaacagctgcgtgcgcgtcagatcacagcacagcagatcaacaagctagaagaacta
tggaaggagaatgcttcagccacttttgatgaccttgagagacctggtgtggatgaagag
ccccagcaagtctgccttaggtatgaggatggattccagtaccagaacatctttgggcca
cttgtgaagttggaggctgactatgacaagaagttgaaggagtctcagacgcaggataag
atcgaggtgcgctgggacattggccttaacaagaaaatctgtgcatacttcaccctggca
aagactgatggagacatgcgcttgatgcacggagatgagttgcgactgagatacctcgga
gaccttcacaagccttggtcaggggtgggacatgtcatcaagattcctgacaactttggc
gaagaggtaggaattgagctcaagtctaacgtcggagtgccaactgactgcagggacaaa
tttgttgttgactttgtttggaagtccacaagcttcgacagaatgcaagctgctctgcgc
aagtttgctgttgatgattcctcagtgtctccatacatttaccaccgcctcttgggacat
gttgaagttgacgagctcctcttccgtcacatctatcttcccaagcagctctctgctccc
aatctgccaacactcaacaactcacagcaatatgctctgaagcatgctctgcagcgccct
ctttctctgatccaaggtccaccaggcacagggaagaccgttacctccgcaaccattgtg
taccagctggtgaagcagactggaggctccgtcctggtgtgcgccccgtccaacactgct
gtcgaccagctcaccgagaagatccataagactgggctcaaggttgtacgtctgtgtgcc
aagtcccgtgaggccattgattctcctgtttctttcttggctctgcacaaccagattcgg
aaccttgaggataatggagagcttcagaagcttcagcagctgaaagaagaaacaggtgaa
ctatcatcagctgacgaaaagcgattccgcatgttgaagaagcaggctgagaaaacattg
ttggaagcagctgatgtgatatgttgcacttgtgtgggagctggagatcctcgtctggca
cgactgaagttccactccattctcatagatgaatccatgcaggccactgagccagagtgt
atggttccggttgtgttaggagccaagcaagtcattttggtaggtgatcactgccagctt
gggcccgtcgtcatgtgtaagaaagcttcccgtgctggtctctcgcagtcactgtttgag
cgtttggttgtcctgggcatccgacccttccgcctcaccgtccaataccgcatgcaccct
cagcttgctcagttcccgtctaacttcttctatgagggatctcttcagaatggtgttgtt
gatgctgaccgcaccatgaaaggcgtgagtttcccatggccccaacaagataaaccccag
ttcttctatgtgacttcgggccaggaggaaattgcagggtcaggaacttcctatctgaac
agaaccgaggcatccagtgttgaaaaacttgtcacacgcttcctcaattcaggtgtcaag
ccagaacagattggtgtcatcactccctatgaaggccagagagcgtatctggttcagtac
atgcagtaccagggacctctcaaccagaagctgtatcagcgcctggaggttgcaagtgtg
gatgccttccagggccgagagaaggacatcattattatgtcctgcgtgcgatccaatgag
caccaaggaattgggttcttgtctgatcctcgtcgtcttaatgtggctctgactcgagca
cgttatggcatcatcattgttggaaacccaaaagtgctctctaagcaaggactatggaac
cacctgttgcatcacttcaaggaaaagaaagttttggtggaagggcccctcaacaacctc
aaggaatccatgatgcagttcagcaaacccaagagactaattaatgcaaccaatccaggg
tcacacttcatgaacacggctatgtatgacgctcgagaggctatggttcctggctccatg
tatgataggtcaggtcagcttaatggctctgcaccaccaccttcccagtgtttcagagga
ccacagtatgatatgtatggccgagctcatgattctctggattatatatctgctgaccac
tcccagcctggactaaacaacttgccagtgccagtgggaatgttcatgaacatggctcat
gtaccacctcgcttctaccagcaacaccagcaggctctggcacaagcacgtggaggaaga
ggtggtgctcgaggtggcagaactggaggcaggaagcccaacaaaaatatgggtggttct
aatgctctacagttgtctcaacccttcagccaagaccccaccacacaaagttactcacag
cctggtctcacgcaagggcacctctcacagggcatgtctgggcctgggttgagtgggctc
tcacagggaggactgtcacaggcagaactttcccaggactcgtacatggtagaccagttc
cagagccagacagatggactcctctcccaggactccacctaccagggtgaccgtgcgttc
ttcactccagcatcacaaacgcaccacttctcacagccgtactga
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integrated database retrieval system
