Penaeus monodon (black tiger shrimp): 119591338
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Entry
119591338 CDS
T08784
Name
(RefSeq) ATP-dependent RNA helicase DDX42-like isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
pmoo
Penaeus monodon (black tiger shrimp)
Pathway
pmoo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmoo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119591338
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pmoo03041
]
119591338
Enzymes [BR:
pmoo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
119591338
Spliceosome [BR:
pmoo03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
119591338
Complex B
119591338
Complex C
U2 SnRNP specific factors
119591338
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
119591338
NCBI-ProteinID:
XP_037795997
LinkDB
All DBs
Position
28:complement(7127700..7137814)
Genome browser
AA seq
754 aa
AA seq
DB search
MQMLVWQTIAYLIDEASMSYNRGRGFGFGGFSFNKKQETTPPPPNATLSKHGYHTMTAIS
QNAISGGCGYGQPRKRPRDEDEYFDDEDESFDGAYQPAPGSPGPQRKEDSDSDEDPLDAF
MAGIEQEVKRTKTKGATEKKEMKGVRDDIDEEDDEESYYRYIQENPNAGRQQEDSEDEIE
YDEDGNPIAPKKPKYIDPLPPIDHSTIEYQDFTKNFYQEHEDIAALTPLQTNELRVKMGI
KVTGFDAPKLVTSFGHFGFDEALMKAIRKSEYTQPTPIQSQAVPIALSGRDAIGIAKTGS
GKTAAFIWPMLVHIMDQKELAPDDGPIGLILAPTRELAQQIYTEARRFGKVYNIQVVCAY
GGGSKWEQSKALEAGAEIVVATPGRMIDMIKMKATNLRRVTFLVLDEADRMFDMGFEPQV
RSICDHVRPDRQTLLFSATFKRKVERLARDVLTDPVRVVQGELGEANQDVTQIVKIMNTG
GHKWNWLNKRLVEFMSAGSVLIFVTKKANAEELCKNLVTKEFEALLLHGDMTQFERNDVI
TAFKKKDKPILVATDVAARGLDIPHIKTVINFDVARDIDTHTHRIGRTGRAGEKGTAYTL
VTEKDKEFAGHLVRNLEGAAQEVPTELLELAMQSTWFRKSRFKQSKAKALGGRGLGFRER
PGLGSTPNNESSGGGGGGSGSGVVNVGPAGQAYGGGDPSTTGPATNRLAAMKAAFQSQYK
SQFTAASAETAWHMDSKTQNHPPRERKRKSRWDD
NT seq
2265 nt
NT seq
+upstream
nt +downstream
nt
atgcagatgttagtgtggcaaaccattgcatatctaatagatgaagccagtatgagttac
aacagaggtcgtggctttgggtttggtggattttctttcaacaagaagcaggagacaaca
ccacccccacccaatgccacactcagcaaacatggctaccacacaatgacagccattagt
cagaatgctatatctggagggtgtggatatggccagcccaggaagagaccaagggatgaa
gatgaatactttgacgatgaggatgagagctttgatggtgcttaccagccagctcctgga
agtcctggaccacagaggaaagaagattcagattctgatgaggatcctttggatgctttc
atggctggtatagagcaagaagttaaaagaacaaagacaaagggggcaactgagaagaag
gaaatgaaaggtgtgcgtgacgacattgacgaagaggacgatgaagagtcttattacaga
tatatacaggagaatcccaatgctggaagacaacaggaagatagtgaagatgagattgag
tatgatgaagatgggaatcccattgctcccaagaaacccaagtacattgatccgctacca
ccaattgaccactccacaatcgaatatcaggacttcaccaaaaacttctaccaggagcat
gaagacatcgcagccctcacacctcttcagacaaatgaattgagagtcaagatggggatt
aaggtgacaggctttgatgctccaaagttggtaaccagctttggccactttggctttgat
gaagcccttatgaaagccattcgcaagtcagaatacacacagcccacccccatccagtca
caggctgtgccaattgctcttagtggacgtgatgccattggcattgctaagacgggtagc
ggtaagactgcagcattcatttggccaatgttagtgcacataatggatcaaaaggagctt
gccccagatgatggcccaattggactaattttggctccaactcgagaattggcacagcaa
atatacacagaagctcgtagatttggcaaagtctacaacatacaggttgtctgtgcttat
ggtggaggcagcaagtgggagcaaagcaaagcattagaagctggtgcagaaattgttgtg
gctactccaggcagaatgattgatatgataaagatgaaggcaactaacttacgacgtgtc
actttcctcgttcttgatgaagctgatcgtatgtttgacatgggctttgaaccacaggta
agatcgatctgtgaccatgtgaggcctgaccgtcagacattactattctcagcaacattc
aaaagaaaagtagagagactggcccgtgatgtcctcacagatcctgtccgtgtagtacaa
ggagagcttggagaagcaaaccaggatgtaacacagattgtgaagatcatgaacacaggt
ggccataaatggaattggctaaacaagagactcgttgaattcatgtctgcaggttcagtt
cttatatttgttacgaaaaaagctaatgcagaagaactttgcaaaaatctggttactaaa
gagtttgaagctcttctcctacatggtgacatgacacagtttgaaaggaatgatgtgatt
actgcattcaagaaaaaggacaagcccatattggtagctactgatgtagctgccagaggt
ctcgatattcctcatattaaaacagttataaattttgatgtggcccgggacattgatacc
cacacacacaggattggacgaacaggtcgagctggtgagaagggcactgcatacaccctt
gtaacagaaaaagataaggagtttgctgggcatcttgttcgaaaccttgaaggtgcagca
caagaggtcccaacagaattgttagaactagccatgcagagcacttggttccgcaaatct
cggttcaagcagagcaaggccaaggctcttggaggccgtggtcttggcttcagagagcgg
ccaggcctagggtcaacaccaaataatgaatcatcaggaggtggagggggaggaagtgga
agtggagtagtcaatgttggtcctgcaggtcaggcatatggaggaggggaccccagtacc
acagggcctgcaaccaatcgcctggctgccatgaaggctgcatttcagtcccagtataag
agtcagttcactgctgcaagtgcagaaacagcctggcatatggacagtaagacacagaac
catccaccacgagaacgtaaaagaaagtcaagatgggatgactga
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