Penaeus monodon (black tiger shrimp): 119592589
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Entry
119592589 CDS
T08784
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
pmoo
Penaeus monodon (black tiger shrimp)
Pathway
pmoo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmoo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119592589
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmoo03019
]
119592589
03041 Spliceosome [BR:
pmoo03041
]
119592589
Messenger RNA biogenesis [BR:
pmoo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
119592589
Spliceosome [BR:
pmoo03041
]
Complex B
Other components
Prp19-related factors
119592589
Complex C
119592589
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
Suf
ARM_TT21
ARM_TT21_C
Cwf_Cwc_15
Motif
Other DBs
NCBI-GeneID:
119592589
NCBI-ProteinID:
XP_037797395
LinkDB
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Position
30:17657033..17666969
Genome browser
AA seq
848 aa
AA seq
DB search
MIMDASSIIIEADDVQYEEELLRNPFSVKHWQRYIEHKKDAAPEKLNIIYERALLQMPGS
YKLWHLYLRLRMEQVKGRCVTDPEFESVNNTFERALVFMHKMPRIWIDYCRFLMNQRKIT
RTRKTFDRALCALPITQHNRIWPLYLKFVMLYNIPETAVRVWRRYLKLCPEDTEDYISYL
MSIGRLEEAAKRYEWCVNTDSFTSKYGKSKHQLWSELCELISKNPQETSLKNAEAIIRHG
LQRYTDQVGMLWNSLAEYYIISALFERARDVYEEGLRSVMTVRDFTQVFDAYAQFEELTL
KKRMEEVGIEVDVEEETELELRLARYEDLMQRRPLLLNSVMLRQNPHNVLEWQKRVTLYE
GKPKMIVATYMEAVKTIDPKQATGKLFSLWVNFAKFYEENNQIVDARIIFERATEVLYVK
VDDLASVWCEWAEMEIRHGNEEEALKLMKRATAPPPQKVAYNDESEPVQRRVYKSLKLWS
MYADLEECLGTFKSCKAVYDRIIDLRIATPQIIINYGMFLQENSYFEEAFKAYEKGISLF
KWPYVYDIWNTYLTKFLERYKGTKIERARDLFEQCLEKCPPNYARNLFLLYAKMEEEHGL
ARHAMQVYSRATKAVPPEEKLSIYNIYLQHAQQIYGVTKTREIYQEAIDDLPDEGCREMC
LRFAEMERKLGEIDRAREIYAYCSQICDPRITPEFWAKWTDFEVAHGNEDTMKELLRIKR
SMQAKYNTQVNMMSAQMLASAGSVAGTVSDLAPGAKDGMRMLEARAVAMNKEEQMSTSVA
PSAAGGSKIMFVRGSTTKRDDEVADTARTANPDEIDLDDDDDDDDDDDSDMPQQREVPAA
VFGELKKE
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atgattatggatgcctcatctataattatagaggcagatgatgtgcaatatgaagaggag
cttctacgtaatcccttttctgtaaagcattggcagaggtacatagaacacaagaaagat
gctgcaccagagaagcttaatatcatatatgaaagggcacttctccagatgccaggcagc
tataagctatggcacctttatttgagattgcgtatggaacaagttaagggacgatgtgtc
acagatccagagtttgagagtgtaaataatacctttgaaagagccttagtattcatgcac
aaaatgcctcgcatatggatagactactgcagatttttgatgaaccagcgaaagataaca
agaaccagaaagacatttgaccgtgcattatgtgctctacccattacccagcacaaccgc
atatggccactttacctcaaattcgtcatgttgtacaatattccagagacagctgtaaga
gtctggagaagatacctaaagctttgccctgaagatacagaggattacataagctatctt
atgtccattggacgattggaggaagctgccaagagatatgagtggtgtgttaatactgat
tcatttacttccaagtatggtaaatcaaaacatcagctatggtcggaactctgcgagtta
atctccaaaaacccacaggagacaagtctgaaaaatgcagaggccatcattcgccatggc
ctgcaacgttacactgatcaggtggggatgctttggaactccttggcagaatattatatc
atcagtgcactctttgagagggcaagagacgtctatgaagaaggtttacgaagtgttatg
acagtaagagatttcacacaagtgtttgatgcttatgctcagtttgaagaattaacacta
aagaaacgaatggaagaagttggcattgaagtggatgtagaagaggaaacagagttggaa
ttacgcttggcacgatatgaggaccttatgcaacggcggcccctcctgttgaattctgtt
atgcttcgccagaacccacacaatgtattggaatggcagaaacgtgtaactctctatgaa
gggaagccaaaaatgattgtagcaacatatatggaagctgtgaagacaattgatccaaaa
caagccacaggaaaacttttttcattgtgggtgaactttgcaaagttctatgaagaaaat
aaccagattgtagatgcgcgaatcatctttgaaagagcaactgaagttctctatgttaaa
gtagatgaccttgcaagtgtgtggtgcgaatgggctgagatggaaataagacatggaaat
gaagaggaagctcttaagctgatgaagcgagcaacagcacctcctccacaaaaggtggca
tacaatgatgaatctgaacctgtccagcgacgcgtctacaagtctttgaaactgtggtct
atgtatgctgacttagaagagtgtttaggtaccttcaagtcctgcaaggccgtttatgat
cgaattatagatctgcgaattgccacaccacaaattatcataaactatggcatgtttttg
caggaaaacagctattttgaggaagcattcaaggcctatgaaaaaggaatttctctcttc
aaatggccatatgtatatgacatatggaatacatatctcacaaaattcttagagcgatac
aagggcactaagattgaaagagcaagagacttgtttgaacagtgcttggaaaagtgtcca
ccaaattatgcacgtaatctgttcctcctgtatgctaaaatggaagaagaacatggattg
gcaaggcatgcaatgcaggtatacagtcgggctaccaaagcagttccacctgaggagaag
ttgtccatttacaacatctatttacaacatgcacagcagatatatggtgttactaaaaca
agagagatttaccaggaggcaattgatgacctgcctgatgaaggttgtcgagaaatgtgt
ctgcggtttgctgaaatggagcgtaaattaggtgagattgatcgggctcgtgaaatctat
gcttactgcagtcagatttgtgatccaagaatcacaccagagttctgggcaaaatggact
gattttgaggttgctcatggaaatgaagacacaatgaaggaactgctgcgtataaagcga
tctatgcaggccaaatacaacactcaggtgaacatgatgtcagcccaaatgttagcatct
gcaggttcagttgctggcacagtgtctgatctagcaccaggagccaaggatggaatgagg
atgcttgaggcccgtgctgtggccatgaacaaagaggaacagatgtccacttctgttgct
ccatctgcagctggaggttccaagatcatgtttgtccgtggttcaactaccaaaagggat
gatgaggttgcagatacagctcgcactgcaaatcctgacgaaattgatttagatgatgac
gatgacgatgatgatgatgatgacagtgatatgcctcagcagagagaggtcccagcggca
gtgtttggtgaactgaaaaaggaatag
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