Penaeus monodon (black tiger shrimp): 119592630
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Entry
119592630 CDS
T08784
Name
(RefSeq) LOW QUALITY PROTEIN: eukaryotic initiation factor 4A-III-like
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
pmoo
Penaeus monodon (black tiger shrimp)
Pathway
pmoo03013
Nucleocytoplasmic transport
pmoo03015
mRNA surveillance pathway
pmoo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmoo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119592630
09122 Translation
03013 Nucleocytoplasmic transport
119592630
03015 mRNA surveillance pathway
119592630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmoo03019
]
119592630
03041 Spliceosome [BR:
pmoo03041
]
119592630
03009 Ribosome biogenesis [BR:
pmoo03009
]
119592630
03012 Translation factors [BR:
pmoo03012
]
119592630
Enzymes [BR:
pmoo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
119592630
Messenger RNA biogenesis [BR:
pmoo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
119592630
mRNA cycle factors
Stress granule specific factors
119592630
Spliceosome [BR:
pmoo03041
]
Complex C
Other components
EJC/TREX
119592630
Ribosome biogenesis [BR:
pmoo03009
]
Eukaryotic type
90S particles
Helicases
119592630
Translation factors [BR:
pmoo03012
]
Eukaryotic type
Initiation factors
eIF-4
119592630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
AAA_30
TniB
UvrD-helicase
Motif
Other DBs
NCBI-GeneID:
119592630
NCBI-ProteinID:
XP_037797453
LinkDB
All DBs
Position
30:22081713..22090828
Genome browser
AA seq
453 aa
AA seq
DB search
MHMCKEDNLKVIPEDPPXKVCRGFVLYRVPFRSSVQHSGVPDQKNRAAVNTMAEGRVRRV
IPEDLSNVEFETSEEVEVVPTFDNMGLREDLLRGIYAYGFEKPSAIQQRAIRPIVKGRDV
IAQAQSGTGKTATFSISILQTLDINVRETQVLTLSPTRELAVQIQKVVLALGDYMNVQCH
ACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIRRRTLRTRSIKMLVLDEADEMLNKGFK
EQIYDVYRYLPPATQVCLISATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAV
EREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDA
IMKEFRSGQSRVLITTDIWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAI
NFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgcatatgtgcaaagaagacaatctcaaagtaatcccagaagatccacccnaaaaggtt
tgtcgtggcttcgttttataccgcgttccattccgttcttccgtccagcattccggagtt
cctgaccagaagaacagagcggcagtaaacaccatggcggaaggacgcgtgagaagagtg
atccccgaggacctctccaatgtcgagtttgagaccagcgaagaggtggaggtcgtccca
accttcgataacatggggctgagagaggatctccttcgtggaatatatgcttatgggttt
gaaaagccatctgctatccaacagcgtgctattcgtcccattgtgaagggtcgtgatgtc
attgcacaggcccagtctggaacgggtaaaaccgccactttttccatctctatcctacaa
acgcttgacatcaatgtccgtgagacccaggtccttacactctcaccaacaagggagttg
gcagtgcaaattcaaaaggttgttctggccttaggagattacatgaatgttcagtgtcat
gcttgcattggagggaccaacttgggtgaggacatccgcaagcttgactatggccagcat
gtcgtatctggcacaccaggtcgagtgtttgacatgatcagacgccgcactctcagaacc
cgttcaattaagatgttggtcctagatgaagcagatgaaatgttgaacaaaggcttcaag
gaacagatctacgatgtttaccgttaccttccaccagctacccaggtctgcttgatctct
gccacacttccccatgaaattcttgagatgacttcaaagttcatgactgatccaatccgt
attcttgtgaaacgtgatgaactgacactggaaggaatcaagcaattctttgtggcagta
gagcgcgaagaatggaaatttgatactttgtgcgacttgtacgatacactgaccatcaca
caagcagtaatcttttgcaacacgaagcgtaaggtggactggctgacagaaaaaatgcga
gaggccaacttcacagtatcttccatgcacggtgacatgccacagaaagagcgagatgcc
atcatgaaggagttccgttcaggccagagtcgagtactaatcactactgatatatgggca
agaggaattgatgtacagcaggtatccttggtcattaattatgacctgccaaacaatcgt
gagttgtacattcatcgcattggtcgatctggtcgttttggaaggaagggtgttgcaatc
aactttgtgaagaatgatgatattcgtatcctgcgagatattgaacagtactactcaaca
cagattgatgaaatgcccatgaatgttgctgatttaatctaa
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