Penaeus monodon (black tiger shrimp): 119593067
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Entry
119593067 CDS
T08784
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
pmoo
Penaeus monodon (black tiger shrimp)
Pathway
pmoo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmoo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119593067
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pmoo03041
]
119593067
03009 Ribosome biogenesis [BR:
pmoo03009
]
119593067
Enzymes [BR:
pmoo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119593067
Spliceosome [BR:
pmoo03041
]
Complex A
U2 snRNP components
U2 related factors
119593067
Complex B
119593067
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
119593067
Ribosome biogenesis [BR:
pmoo03009
]
Eukaryotic type
90S particles
Helicases
119593067
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
SRP54
AAA_19
Flavi_DEAD
ResIII
nSTAND3
AAA_30
ATPase
AAA_25
ABC_tran
NACHT
Motif
Other DBs
NCBI-GeneID:
119593067
NCBI-ProteinID:
XP_037797912
EnsemblRapid:
LOC119593067
LinkDB
All DBs
Position
3:19036156..19049121
Genome browser
AA seq
734 aa
AA seq
DB search
MSKRKIDIDPSTLKKRYQGDYEKDSDRDSGYHSHGNASANSGYGHQQRGAVAMSLNPFTN
LPYTPRYYELYRKRIGLPVWEYRNRFFELLGRHQTIVLVGETGSGKTTQMPQWCVEFARS
KGKKGVACTQPRRVAAMSVAQRVAEELDVALGQEVGYSIRFEDCSSSKTVLKYMTDGMLL
REAMSDPMLENYQVILLDEAHERTLATDILMGVLKEVLKQRSDLKLVVMSATLDAGKFQH
YFDKAPLLNVPGRTHPVEIFYTPEPERDYLEAAIRTVIQIHICEEIAGDVLLFLTGQEEI
EEACKRIKREVDALGPDVGELKCIPLYSTLPPNLQQRIFEAPPPNKPNGAIGRKVVVSTN
IAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCF
RLYTEKAFKNEMQDNTYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALEL
LNYLAALNDDGNLTELGAIMAEFPLDPQLAKMVIASCDFNCSNEILSITAMLSVPQCFVR
PNEAKKAADEAKMRFAHIDGDHLTLLNVYHAFKQNMEDVQWCYDNFVNYRSLKSADNVRQ
QLSRIMDRFSLKRTSTDFNSRDYYINIRKALVSGFFMQIAHLERTGHYMTIKDNQVVQLH
PSTCLDHKPEWVLYNEFVLTTKNYIRTVTDIKPEWLIKVSPNYYDMQNFPQCEARRQLES
IVARLESRQYREGF
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaacgaaaaatagacattgatccatcgacgctcaagaagagatatcaaggagat
tatgaaaaggactcagacagagacagtggttaccatagccatggaaatgcaagtgctaat
tccggatatggccatcagcagagaggggctgttgcgatgtctcttaatccttttacgaat
ctgccatatacaccaagatattatgaattatataggaaaagaattggcttgccagtatgg
gaataccgtaatagattctttgagttgttgggccgtcatcagaccattgtattagttgga
gagaccggatccggtaaaactacacagatgccccagtggtgtgttgagtttgctcggtcg
aaaggaaagaaaggagttgcgtgtacccaacccaggagagtagcagccatgtcagtagct
caacgtgtagcggaggaattagatgtagctcttggacaggaggttggttattccatccgt
tttgaagattgttcttcatcaaagactgttctcaagtacatgacagatggtatgttactt
agagaagctatgagtgatccgatgcttgaaaattaccaggtcatcttgcttgatgaagct
cacgaacgtacactagcaacagatatcctcatgggtgtcttgaaggaggttcttaagcaa
cgaagtgacttgaagctagtagttatgtctgccactttagatgctggtaaattccagcat
tactttgataaagcccccctactgaatgtccctggcagaactcatcctgtcgaaattttc
tacacaccagagccagaaagggattacttagaagctgccattagaactgtcatacagata
cacatttgtgaagaaatagctggggatgttttgttgttccttactggtcaggaagaaatt
gaagaagcatgtaagcgcatcaagagagaggtagatgctcttgggccagatgttggagag
ctcaaatgtattcctctgtattcaacactccctcccaatctccaacaaagaatttttgaa
gctccacctcccaacaaacccaatggcgctattggtcgtaaggtggtggtatcaacaaat
attgcagaaacatcactaacaattgatggtgttgtgtttgtgattgatccagggtttgct
aaacagaaggtgtacaatccaagaatccgtgtagaatcattgttggtctcaccaatcagt
aaggcttctgctcagcagcgtgctggtcgagcaggtcgaaccagacctggcaaatgtttc
cgcttatacacagagaaagctttcaaaaatgagatgcaggacaatacctacccagaaatt
ctcagatcaaatcttggctcggtagttttacagctgaagaaattgggcattgatgatctt
gtgcactttgacttcatggatccaccagcacctgagacacttatgagagccttggagctg
ctaaactacctggcagccctcaatgatgatggtaatctgactgaattaggtgcaattatg
gctgagttcccacttgatccccagctggccaagatggtcattgcttcttgcgatttcaac
tgctcaaatgaaattctgtctatcactgccatgctctcagtaccccagtgctttgtgcgc
cctaatgaggctaagaaggctgcagacgaggccaagatgagattcgcccacattgatggt
gaccaccttacgctgctcaatgtctaccatgccttcaaacaaaatatggaggatgtgcag
tggtgctatgacaactttgtcaactaccgttcactcaaatcagctgataacgttcggcaa
cagctgtccaggatcatggaccgattcagcctcaaacgtacctcaactgacttcaattct
cgtgactactacattaacatccgcaaggctcttgtatcagggttcttcatgcagattgct
catcttgaaagaactgggcattacatgaccatcaaagataaccaggttgtgcagcttcac
ccatcaacttgtttagaccacaaaccagagtgggtcctttacaatgagtttgtcctaacc
acgaaaaactacatccgcacagttacagatataaaacctgagtggctgataaaagtttct
ccaaactactatgacatgcagaacttcccacagtgtgaagcccggcggcagctggagagt
attgttgcacgtctggaatctagacagtatagagaagggttctag
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