Pseudomonas moorei: PMm318_A08230
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Entry
PMm318_A08230 CDS
T11016
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pmor Pseudomonas moorei
Pathway
pmor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PMm318_A08230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmor03019
]
PMm318_A08230
Enzymes [BR:
pmor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PMm318_A08230
Messenger RNA biogenesis [BR:
pmor03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PMm318_A08230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
BFT60064
LinkDB
All DBs
Position
894628..896490
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AA seq
620 aa
AA seq
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MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKVYARDLKFVSACIFGGVGMN
PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPANHKRSLL
AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLSAVAIHGNKSQNARTKALADFKAGDV
RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTKQKIADGDLMGFDSSAVEAEKPEVRERPDVRNPRNPRGPRGDGPNGSGGGRK
DKGKDKGKEKPAASGRGERPAREQKPREGTPAREQQRPAPRPAADRAPDEFLDDDIDNFG
NRVDYVPQQKPAQGRGRRPGAPAHGATAGSGAPRGGKPQGRQNGPRNSDGASTGTPPAKR
SGPRNGAPRDGQARREDSRNRRPARDDQPRSEPAVQNPRGPAPKIMHKESKADRFPTPEQ
LDQLPTRPRGEKPALLTRNR
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttagtccgcgccatcgaggcagcgggc
tataccgagcctactccggtgcaacagcgggccattcccgccgtgttgcaaggtcgcgac
ctgatggtcgcggcacagacaggtactggtaaaaccggcggtttcgcccttccgatcctg
gagcggttgttcccgaacggtcatccggacaaatcccagcgtcatggcccgcgccaacca
cgcgtcctggtcctgacccctacccgcgaactcgcggcgcaagtgcacgaaagcttcaag
gtctatgcccgtgacctgaagttcgtcagcgcctgcatcttcggcggcgttggcatgaac
ccgcaggttcaggccatgtcccgcggtgtagacgtgctggtggcctgccctggccgcctg
ctcgacctcgccggccaaggtagcgtcgacctgtcccacgtggaaatcctcgtgctggac
gaagccgaccgcatgctcgacatgggcttcgtccatgacgtgaaaaaggtcctggcccgc
ctgccggccaaacggcagaacctgctgttctccgcgaccttctccaaagacatcaccgac
ctcgccggcaaattgctgcacaacccggaacgcatcgaagtcacgccgccgaacaccacg
gtcgagcgcatcgagcaacgcgtgttccgcctgccggccaaccacaagcgttccctgctg
gcgcacctgattaccgccggtgcctgggaacaagtgctggtgttcacccgtaccaagcac
ggcgccaaccgcctggccgagtacctggacaagcacggcctgagcgctgtcgcgatccac
ggcaacaagagccagaacgcccgcaccaaagccctggccgacttcaaggccggtgacgta
cgcatcctggtcgccaccgacatcgccgctcgcggcctggacatcgaccagttgccacac
gtggtcaacttcgaactgccgaacgtcgatgaagactacgtgcaccgcatcggccggact
ggccgtgccggtcgttcgggcgaggcgatctcgctggtggctccggacgaagagaagctg
ctcaaaagcatcgaacgcatgaccaagcagaaaatcgccgacggtgacctgatgggcttc
gattcgagcgccgtggaagccgagaagcctgaagttcgcgagcgtccggatgtgcgtaac
ccgcgcaatccacgtggcccgcgcggcgatggcccgaacggcagcggtggcggtcgcaaa
gacaagggcaaggacaaaggcaaggaaaaacctgccgcgtccggtcgcggcgagcgcccg
gcccgtgagcaaaagccgcgcgaaggcacgccggcccgtgaacagcaacgcccggctcct
cgcccggccgctgatcgtgccccggacgagttcctcgacgacgatatcgataacttcggt
aaccgcgtcgactacgtgccacagcaaaaaccggcccagggccgtggccgccgtcctggt
gctccggcacatggcgcgacggcaggttccggcgcaccacgtggcggcaagccacaaggt
cgccagaacggtccgcgcaacagcgatggcgccagcaccggcacaccgccagccaaacgc
agcggcccgcgcaatggtgcgccgcgtgacggccaggcccgtcgcgaagactcgcgcaac
cgccgtccggcccgcgacgaccagcctcgttcggaaccggccgtgcagaacccgcgtggc
ccggcgccgaagatcatgcacaaggagtcgaaggctgatcgcttcccgacacccgagcag
ctggatcaactgccaacccgccctcgcggtgaaaaaccggccttgctgacccgcaatcgc
tga
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