Pseudomonas moorei: PMm318_A28690
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Entry
PMm318_A28690 CDS
T11016
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pmor Pseudomonas moorei
Pathway
pmor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PMm318_A28690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmor03019
]
PMm318_A28690
03009 Ribosome biogenesis [BR:
pmor03009
]
PMm318_A28690
Enzymes [BR:
pmor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PMm318_A28690
Messenger RNA biogenesis [BR:
pmor03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PMm318_A28690
Ribosome biogenesis [BR:
pmor03009
]
Prokaryotic type
rRNA helicases
PMm318_A28690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_dimer
BscB_a-b
Motif
Other DBs
NCBI-ProteinID:
BFT62110
LinkDB
All DBs
Position
3120734..3122407
Genome browser
AA seq
557 aa
AA seq
DB search
MTQEIGGFAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAF
ALPILHRIDPSKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPET
RQTVLFSATLPQSIRAIAERHLRDPKHVKIQSKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVAEAESTHGDLLDRLTADIGCSPRAL
AAALLRKATNGQALNLAAIEKERPLVPNNAPRGDRPERSGDRPERGDRERRAPIPLAEGR
ARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLERLLTKLK
DTRVAGKQLKLRRYRED
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaatcggcggcttcgccgctcttgaacttcatcccaatattgtcgctgca
gtagtcgctaccggctatgaagagccttcggccattcagcagcagtcgattccgatcatt
ctcgccggtcacgatatgattggtcaggcgcaaaccggtaccggtaaaaccgctgccttt
gccctgcctatcctgcaccgcattgatccgtccaagcgcgagccgcaagctctgatcctg
gccccaactcgtgagttggcgctacaagttgcaaccgctttcgaaacctacgccaagcaa
atgccgggcgtaactgttgtggctgtctacggcggcgcgccgatgggcccacaactgaaa
gcaatccgtaatggcgcacagatcgttgtcgccactccgggccgtctgtgcgaccacctg
cgtcgcgacgaaaaagtactggccaccgttaaccacctggttctcgacgaagccgacgaa
atgctcaagctgggcttcatggacgacctggaagttatcttcaaggccatgccggaaacc
cgtcagaccgtattgttctcggctaccttgccacaatcgatccgtgccattgctgagcgc
cacctgcgcgatccgaagcacgtgaagatccagagcaagacccagaccgttaccgcgatc
gaacaggctcacctgttggttcacgctgaccagaagacttctgccgttctcagcttgctg
gaagtggaagatttcgacgcgctgatcatgttcgtgcgtaccaagcaagcgaccctggac
ctggccagtgccctggaagccaaaggctacaaagccgctgcgctgaacggtgacattgcc
cagaaccagcgtgagcgtgtgatcgactccctcaaggatggccgtctggacatcgttgtg
gcgaccgacgttgctgctcgtggcctggacgttccgcgcatcactcacgtgttcaacgtt
gacatgccgtacgacccggagtcctacgttcaccgtatcggccgtaccggccgtgccggt
cgcgaaggtcgcgcgctgttgctggtgactccacgtgagcgccgcatgctgcaggtcatc
gagcgtgtaaccggtcagaaagttgccgaagttcgtctgccggacgctcaagccgttctg
gacgcgcgcatcaagaaactgaccaacagcctttcgccgctggtggctgaagctgaatcg
acccatggtgatctgctggatcgcctgactgccgatatcggttgcagcccgcgtgccttg
gccgcagccctgctgcgcaaggcgaccaacggtcaagcgctgaacctggccgctatcgag
aaagagcgtccactggtgccgaacaacgcaccacgtggcgatcgtccagagcgttccggt
gatcgtcctgagcgtggtgaccgcgagcgtcgcgcaccaatccctctggccgaaggccgt
gctcgttgccgtaccgcgctgggcgcgcgtgatggcatcgctgccaagaacctgctgggc
gccatcctcaatgaaggtggtctggctcgtgaagccatcggtcgcatccaggttcgtgac
agcttcagcctcgttgagctgccggaagatggtctggagcgtctgctgacgaagctgaag
gacactcgcgttgccggtaagcagttgaagttgcgtcgctaccgcgaagattga
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