Pseudomonas moorei: PMm318_A30110
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Entry
PMm318_A30110 CDS
T11016
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pmor Pseudomonas moorei
Pathway
pmor03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pmor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PMm318_A30110 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmor03400
]
PMm318_A30110 (mfd)
Enzymes [BR:
pmor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PMm318_A30110 (mfd)
DNA repair and recombination proteins [BR:
pmor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PMm318_A30110 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
AroM
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BFT62252
LinkDB
All DBs
Position
complement(3279756..3283205)
Genome browser
AA seq
1149 aa
AA seq
DB search
MPVLRLPHLPAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSF
FAPDLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELVHGVLVVPITTALHRLAPT
KFLLGSSLVLDVGQKLDVEQMRTRLEATGYRYVDTVYEHGEFTVRGSLIDLFPMGSKLPY
RIDLFDDEIETLRTFDPENQRSIDKVDSVKLLPAKEFPLQKEAVTRFKARFRERFDVDFR
RCPIFQDLSSGITPAGIEYYLPLFFEETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN
RYEERRVDPSRPLLPPAELFLPVEDCFARLKNWPRVVASQQDVESGAGRERFPARELPNL
AIEAKATQPLAALSGFLDEFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDFVAS
KERLAITIAPLDEGLLLDDPALALIAESPLFGQRVMQRRRREKRADANNDAVIKNLTELR
EGAPVVHIDHGVGRYLGLATLEIDSQTAEFLALEYAEGAKLYVPVANLHLIARYTGSDDA
LAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGFP
FEETPDQQTTIEAVREDMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAILVPT
TLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAVADLAEGKIDIVIGTHKLLQDDV
KIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT
PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARI
GIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQITPDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGDGQSGQIQAVGFTLYMEMLERAVKSIRKGEQPNLDQPLGGGPEVNLRVPALIPEDYLP
DVHARLILYKRIASATDEEGLKDLQVEMIDRFGLLPEPTKNLMRITALKLQAELLGIRKV
DGGPQGGRIEFAAQTPVDPLTLIKLIQSQPKRYKFEGATVFKFMVPMERPEERFNTVEAL
FERLIPKTA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgttctgcgtctaccgcatctccctgccgcggcaggtaaacagcattggggcaac
ctgcccggtgccgccctgagcctggcgatcgccgaggccgccagtgcggccaagcgcttt
accctgctactgaccgccgacagccaaagtgccgaacggctggaacaggagctgagtttc
ttcgccccggatttgcccgtgctgcatttccccgactgggaaaccctgccctacgatctg
ttctcgccgcaccaggacatcatttcccagcgcatcgccagcctgtatcgactgccggaa
ctggtgcacggcgtgctggtggtgccgatcaccaccgccctgcatcgcctggcaccgacc
aaattcctgctcggcagcagcctggtgctggacgtcggccagaagctcgacgtcgagcaa
atgcgcacccgcctcgaagccaccggctatcgctacgtcgataccgtgtacgagcatggc
gaattcacggtccgcggatcgctgatcgacctgttcccgatgggcagcaagctgccttac
cggattgacttgttcgacgacgaaatcgaaaccctgcgcaccttcgatccggagaaccaa
cgctccatcgacaaggtcgattcggtcaagctgttgccggccaaggaattcccgctgcag
aaagaagccgtgacccgtttcaaggcacgctttcgcgagcgcttcgacgtcgacttccgc
cgctgcccgatctttcaggacttgagcagcgggattactcccgccggcatcgagtactac
ctgccattgttcttcgaggaaacctcaacgctgttcgattacctgccccaggacactcag
gtgttctcattgcccggcatcgaacaggcagcggaaaacttctggaacgacgtgcgcaat
cgctatgaagagcggcgtgtcgatccatcccgtcctttattgccacccgccgaattgttc
ctgccggtggaagactgcttcgcacgccttaagaactggccacgggtcgtcgccagtcaa
caggacgttgaatccggtgccggccgcgagcgcttccctgcccgggaactgccgaacctg
gccatcgaagccaaggccacccaaccgctggcggcgctgtccggttttctcgacgagttt
cccgggcgcgtgctgtttaccgccgaatccgcaggccggcgcgaagtgctgctggaactg
ctggaacgcttgaagctgcgaccaaaaaccgtcgacagctggccggacttcgtggcgagc
aaggaacgcctggcaatcaccatcgcgccactggatgaaggcttgctgctggacgatccg
gccctggccctgattgccgaaagcccgctgttcggtcaacgcgtgatgcagcgccgtcgc
cgcgaaaaacgcgccgatgccaacaacgacgcggtgatcaagaacctcaccgaactgcgt
gaaggcgcgccggtggtgcatatcgatcacggggtcggtcgctacctcggcctcgccacc
ctggaaatcgacagccagacggccgaattcctcgccctggaatacgccgagggcgccaag
ctctacgtgccggtcgccaacctgcatctgatcgcccgctataccggcagcgacgatgcc
ttggccccgctgcaccgcctgggctccgagacctggcagaaagccaagcgcaaagccgcc
gaacaagtacgcgacgtcgcagccgaattactcgacatctatgcacgccgcgccgcccgc
gaaggttatgccttcgccgacccgaaagccgattacgcgaccttcagcgccgggttcccg
tttgaagaaaccccggaccagcagaccaccatcgaagccgtgcgcgaagacatgctcgcg
ccaaaaccgatggaccgcctggtgtgtggcgacgttggtttcggcaagaccgaagtggcg
atgcgcgccgccttcatcgccgtgcacggcggcaagcaagtcgcgattctggtgccgacc
accctgctcgcccagcagcactacaacagcttccgcgaccgcttcgccgattggccggtg
accgtggaagtgatgagccgcttcaagtctgccaaggaagtgaatgcggcggtggcggac
ctggccgaaggcaagatcgacatcgtcatcggcacgcacaagttgctgcaggacgacgtc
aaaatcaaaaacctcgggctggtgatcatcgacgaagaacaccgtttcggtgtgcgccag
aaagaacagctcaaggcactgcgcagcgaagtcgacattctcaccctgaccgccacgccg
attccgcgcacgctgaacatggcggtgtcgggcatgcgcgacctgtcgatcatcgccacg
ccgccggcgcgtcgcctgtccgtgcgcactttcgtcatggaacagaacaagagcacggtc
aaggaagccctgctccgcgagctgctgcgtggcggccaggtctactacctgcacaacgac
gtgaagaccatcgagaaatgcgccgccgatctcgccgaactggtgccggaggcacggatc
ggcatcggtcacgggcagatgcgcgaacgcgaactcgaacaggtgatgagcgacttctac
cacaagcgcttcaacgtgctgatcgcctcgaccatcatcgagaccggcatcgacgtgccg
agcgccaacaccatcatcatcgagcgcgccgacaaattcggcctggcgcagctgcaccag
ttgcgcggccgggttggacgcagtcaccaccaggcttacgcctacctgctgacaccaccg
cgccagcaaatcaccccggacgcggaaaagcgcctggaagcgatcgccaacacccaggac
ctcggcgcgggcttcgtactcgccaccaacgacctggaaatccgtggcgccggcgaattg
ctcggcgatggtcagagcgggcagatccaggcggtcggtttcacgctgtacatggaaatg
ctcgaacgtgcggtgaagtcgatccgcaagggcgagcagccgaacctcgaccaacccctg
ggcggcggtccggaagtcaacttgcgggtgccggcactgattcccgaggactatctgccg
gacgtccacgcacgcctgattctctacaagcgcatcgcctcggccaccgatgaggaaggc
ctgaaggatctgcaagtggaaatgatcgatcgtttcggcctgttgccagagccgaccaag
aacctgatgcgcatcaccgccctgaagttgcaggccgaattgctgggcatcagaaaggtc
gacggtggtccgcaaggtggtcgcatcgagttcgccgcgcaaaccccggtcgacccgctg
acgctgatcaaactgatccagagccagcccaaacgctacaaattcgaaggggccacggtg
tttaagttcatggtcccgatggaacgcccggaagagcgctttaatactgtagaggcgctg
ttcgagcgcctcatcccgaaaactgcttga
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integrated database retrieval system
