Pseudomonas soli: O165_003075
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Entry
O165_003075 CDS
T03276
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pmos
Pseudomonas soli
Pathway
pmos03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmos00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
O165_003075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmos03019
]
O165_003075
03009 Ribosome biogenesis [BR:
pmos03009
]
O165_003075
Enzymes [BR:
pmos01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
O165_003075
Messenger RNA biogenesis [BR:
pmos03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
O165_003075
Ribosome biogenesis [BR:
pmos03009
]
Prokaryotic type
rRNA helicases
O165_003075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
TrkA_N
Motif
Other DBs
NCBI-ProteinID:
AIN57335
UniProt:
A0A1H9FHK0
LinkDB
All DBs
Position
615241..616923
Genome browser
AA seq
560 aa
AA seq
DB search
MTQETGGFAALDLNPNIVAAVLATGYEEPSAIQHQSIPIILAGHDMIGQAQTGTGKTAAF
ALPILNKIDVSKREPQALILAPTRELALQVATAFETYAKQMPGVNVVAVYGGAPMGPQLR
AIRNGAQIVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAIPAT
RQTVLFSATLPASIRAIAERHLREPKHVKIQSKTQTVTAIEQAHLMVHADQKIPAVLRLL
EVEEFDALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRMLQVI
ERVTGQKVAEARLPNPQAVLDARIKKLTKSLAPLVAESEASHGELFDRLTADLGCSARAL
ASALLRKATNGQALDLASVEREQPLVPTHTPRERSTGERTERGERSDRGDRERRAPMPLA
EGRVRCRTALGARDGIAAKNLLGAILNEGGLARDAIGRIQVRDSFSLIELPEDGLERLLT
KLKDTRVAGKQLKLRRYRED
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaaccggcggattcgccgctctcgatctcaatccgaatatcgttgctgct
gttctggccaccggctacgaagagccttcggctattcagcatcagtcgatcccgatcatc
ctcgccggtcacgacatgatcggccaggcgcagactggcaccggcaagaccgctgccttc
gccctgccgatcctcaacaagatcgacgtgagcaagcgcgaaccgcaagccctgatcctg
gcgccaacccgtgagttggcgctgcaagtagccaccgctttcgaaacctacgccaagcag
atgccgggcgttaacgtggtggctgtctacggtggtgccccgatgggcccacaactgcgt
gccattcgtaacggcgcgcaaatcgtcgtggccacccctggccgcctgtgcgaccacctg
cgccgcgacgagaaagtcctgtccaccgttcagtacctggtactcgacgaagccgacgaa
atgctcaagctgggcttcatggacgacctcgaagtgatcttcgacgccatccctgcaacc
cgccagaccgtactgttctccgccaccctgccggcctcgatccgtgccatcgccgagcgc
cacctgcgcgagccgaagcacgtcaagatccagagcaagacccagaccgtgaccgcgatc
gagcaggcccacctgatggtccacgccgaccagaagatcccggccgtgctgcgcctgctg
gaagtggaagagttcgacgcgctgatcgccttcgtgcgtaccaagcaagccaccctggac
ctggctgccgccctggaagccaaaggctacaaggctgccgcgctgaacggcgacatcgcc
cagaaccagcgtgagcgcgtgatcgactcgctcaaggatggccgcctggacatcgtcgtc
gccaccgacgtcgctgcccgtggtctggacgtgccgcgcatcacccacgtgttcaacgtc
gacatgccgtacgacccggagtcctacgtgcaccgtatcggccgtactggccgtgccggt
cgcgatggccgtgcgctgctgctggtcaccccgcgtgagcgccgcatgctgcaggtgatc
gagcgtgtcaccgggcagaaggttgccgaagcccgcctgcctaacccgcaggccgtgctg
gacgcacgcatcaagaagctgaccaagagcctggcgccactggtggccgagtccgaggcc
agccatggcgagctgttcgaccgcctgaccgccgacctgggttgcagtgcccgtgccctg
gcttcggccctgctgcgcaaggccaccaatggccaggcgctggacctggcttcggtcgag
cgcgagcagccgttggtgccgacccacactccgcgtgagcgcagcactggcgagcgtacc
gagcgtggtgagcgcagcgaccgtggtgaccgcgagcgtcgcgcgccgatgccactggct
gaaggccgcgtgcgttgccgtaccgccctgggtgcccgtgacggcatcgccgccaagaac
ctgctgggcgctatcctcaacgagggtggcctggcgcgtgatgccatcggtcgtatccag
gtgcgtgacagcttcagcctgatcgagctcccggaagacggcctcgagcgtctgctgacc
aagctcaaggacacccgcgtggccggcaagcagctgaagctgcgtcgctaccgcgaggac
tga
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