Pseudomonas soli: O165_003655
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Entry
O165_003655 CDS
T03276
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pmos
Pseudomonas soli
Pathway
pmos03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmos00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
O165_003655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmos03019
]
O165_003655
03009 Ribosome biogenesis [BR:
pmos03009
]
O165_003655
Enzymes [BR:
pmos01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
O165_003655
Messenger RNA biogenesis [BR:
pmos03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
O165_003655
Ribosome biogenesis [BR:
pmos03009
]
Prokaryotic type
rRNA processing factors
O165_003655
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AIN57445
LinkDB
All DBs
Position
complement(726817..730005)
Genome browser
AA seq
1062 aa
AA seq
DB search
MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGKITRIEPSLEAAFVDFGSE
RHGFLPLKEISREYFKKAPEGRVNIKEVLSEGQEVIVQVEKEERGNKGAALTTFISLAGR
YLVLMPNNPRAGGISRRIEGEERNELREALNGLTVPGDMGLIVRTAGLGRSSEEMQWDLD
YLLQLWTAIKEASLDRTAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALTFIR
QVMPQYASKVKLYEDSVPLFNRFQIESQIETAFQRVVDLPSGGSIVIDPTEALVSIDINS
ARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREC
LEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCSGTGIIRDVESLSLAILRL
IEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDHLETPHFEVQ
RLRDDNPDVLNNQSSYEIASAETEEAPLPTATRTLVRQEAAVKTAPARANAPVPAAVEEQ
PAAPVAAAPSVPEPSLFKGLVKSLVSLFAGKEEPAAAPAVTTEKPATERSPRNEERRNGR
QQSRNRNGRREEDRKPREERSERAPREERQPREERAPREERAPREERQRQPREDRRGNRE
ERVRELREPLDAAPAPAAREERAPREERAPREERVAREERAPREERAPREERAPREERAP
REERAPREERAPREERAPREERAPREERAPREERQLRPEAQAVEQAAELAEEQLPNDELL
QDEQEGTDGERPRRRSRGQRRRSNRRERQRNANGELIEGDEDAGEEQQPQQHQATELGAE
LAAGTAVIAAVATSNISADAEAQANQQAERASAAVAETQVEITEVVAEQVAIAPVVEQPV
SEPVVAVEPSIEPVVEVAPQPVVEEAPAEQPAVVAEALQAPAVEAGEIEQPQVVEATVVE
APVAEQPVAVVEPVVEAQPEVTEAPAAEPAPVVAEQAPEEAPAPVEAPSAMLANGRAPND
PREVRRRKREAEAAAAAAAQAAAEAAPAQALETADEHKPHHG
NT seq
3189 nt
NT seq
+upstream
nt +downstream
nt
atgctgattaacgcaactcaacccgaagagttgcgtgtagccctggtggacggccaacgc
ctctacgacctggacatcgagtccggtgcccgtgagcagaaaaaggccaacatctacaaa
ggcaagatcacccggatcgagcccagccttgaagccgccttcgtcgacttcggctccgaa
cgtcacggcttcctgccgctgaaggaaatctcccgcgaatacttcaagaaagcccctgaa
ggccgggtcaacatcaaggaagtcctgagcgaaggccaggaagtcatcgtccaggtcgag
aaggaagagcgcggcaacaaaggcgccgccctgaccaccttcatcagcctggccggccgc
tacctggtgctgatgcccaacaacccgcgcgccggcggcatctcccgccgcatcgaaggc
gaagagcgcaacgagctgcgtgaagcactgaacggcctgaccgttccgggcgacatgggc
ctgatcgtgcgtaccgcgggccttggccgcagcagcgaagaaatgcagtgggacctcgac
tacctgctgcagctgtggaccgccatcaaggaagcctcgctggaccgtaccgcgccgttc
ctgatctaccaggaaagcaacgtcatcatccgcgccatccgcgactacctgcgccaggac
atcggcgaagtgctgatcgacagcatcgacgcccaggaagaagccctgaccttcatccgc
caggtgatgccgcagtacgccagcaaggtcaagctgtacgaagacagcgtgccgctgttc
aaccgcttccagatcgaaagccagatcgagaccgccttccagcgcgtcgtcgacctgccg
tccggcggctcgatcgtgatcgacccaaccgaagccctggtttccatcgatatcaactcg
gcgcgcgccaccaagggcagcgacatcgaggaaaccgccctgcagaccaacctggaagcg
gccgaagagatcgcccgccagctgcgcctgcgtgacatcggcggcctgatcgtcatcgac
ttcatcgacatgaccccggcgaagaaccagcgcgccgtcgaagaacgcgtgcgcgaatgc
ctcgaggccgaccgcgcccgtgtgcaggtcggccgcatctcgcgcttcggcctgctggaa
atgtcccgccagcgcctgcgcccatcgctgggcgagagcagcggcatcgtctgcccgcgc
tgctcgggtaccggcatcatccgtgacgtcgagtcgctgtcgctggcaatcctgcgcctg
atcgaggaagaagccctgaaggaccgcaccgccgaggtgcgcgcccaggtaccgatcccg
gtggccgccttcctgctcaacgagaaacgcaactcgatcaccaagatcgagctgcgcact
cgcgcgcgcatcatcatcctgccgaacgaccacctggaaaccccgcatttcgaagtccag
cgcctgcgcgacgacaacccggacgtgctgaacaaccagtccagctacgaaatcgcctcg
gccgagaccgaagaagcgccgctgccgaccgccacccgcaccctggtacgccaggaagcc
gcggtgaagaccgcaccggcccgcgccaacgcaccggtaccggccgctgtcgaagagcag
ccagccgcacccgtggcagcggcgcctagcgtaccggagccaagcctgttcaagggcctg
gtcaagtcgctggtcagcctgttcgccggcaaggaagagcctgccgccgcaccggccgtc
accaccgaaaaaccggccacggagcgttcgccacgcaacgaggagcgccgcaacggtcgc
cagcagagccgcaaccgcaatggccgccgcgaggaagaccgcaagccgcgtgaagaacgc
agcgagcgcgccccgcgtgaagagcgccagccacgcgaagagcgtgcaccgcgtgaagaa
cgcgccccacgcgaagagcgtcagcgccagccgcgcgaagaccgccgtggcaaccgtgaa
gagcgcgtgcgcgaactgcgtgagcccctggatgccgcaccggccccggccgcccgcgaa
gaacgcgccccgcgtgaagagcgtgcgccacgtgaggaacgtgtagcccgtgaagagcgt
gcaccacgtgaagaacgtgcccctcgcgaagagcgcgcaccacgtgaagaacgtgcaccg
cgtgaagaacgcgcaccacgtgaagagcgtgcaccgcgtgaagaacgcgcccctcgtgaa
gagcgtgcgccacgtgaagaacgcgctccgcgcgaagagcgccagctgcgccctgaggcg
caggccgtcgaacaggccgccgagctcgccgaagagcaactgccgaacgacgagctgctg
caggacgagcaggaaggcaccgatggcgagcgtccgcgccgccgctcccgtggccagcgt
cgtcgcagcaaccgtcgtgaacgccagcgcaacgccaatggcgagctgatcgaaggcgac
gaagacgccggcgaagagcagcagccacaacagcaccaggccaccgagctgggcgctgaa
ctggccgccggcactgccgtcatcgccgccgttgccaccagcaacatcagcgccgatgcc
gaagcccaagccaaccagcaggccgagcgcgccagcgccgctgtcgccgaaacccaggtg
gaaatcaccgaggtcgtggccgagcaggtcgccatcgccccggtggtcgagcaaccggtc
agcgagccagtggtcgccgtcgagccgagcatcgaaccggtggtcgaagtagcgccgcag
ccagtggtcgaagaagcccctgccgagcagcctgccgtcgtcgccgaggcgctgcaagcc
cctgccgtggaagccggtgaaatcgagcagccgcaggtagtcgaagccaccgtggtcgaa
gccccggtagccgagcagcctgtagcggtcgtcgagccagtggtcgaggcccagccggaa
gtgactgaagcacctgccgccgagcctgcgccggtcgttgccgagcaggcgcccgaggaa
gcaccggccccggtcgaagcgccttcggcgatgctggccaacggccgcgccccgaacgac
ccacgtgaagtgcgtcgccgcaagcgcgaagccgaagctgcagccgccgctgccgcccag
gccgctgccgaagccgcccctgcgcaagcgctggaaaccgccgatgagcacaagcctcat
cacggttga
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