Pseudomonas soli: O165_009385
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Entry
O165_009385 CDS
T03276
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pmos
Pseudomonas soli
Pathway
pmos03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pmos00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
O165_009385 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmos03400
]
O165_009385 (ligD)
Enzymes [BR:
pmos01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
O165_009385 (ligD)
DNA repair and recombination proteins [BR:
pmos03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
O165_009385 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AIN58492
LinkDB
All DBs
Position
complement(1962621..1965215)
Genome browser
AA seq
864 aa
AA seq
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MEKKLEKYNKMRDFKESPEPAGLTKSSRRKGKAHALQFCIQKHDASRLHYDFRLELDGTL
KSWAVPKGPSLDPKVKRLAVHVEDHPLDYATFEGSIPEGHYGAGDVIVWDRGMWIPLGDP
VEAYAKGRLKFELQGEKLSGLWNLVRTHMPGKQEQWFLIKHQDSSARPEDIYDVVVAEPD
SVISERAIVAKSPNTSITAKAKPTKKAAEPVRQTKLSPLTGARKAKLPGYIKPQLATLVE
KPPSGRWIYECKFDGFRMLARIEDQKVRLFTRNGHDWTHKLPRQAKALLSLGLNSAWLDG
EIVVIDDQGIPDFQALQNAFEAGQSGNIFYYLFDLPYFNGVDLREVPVEERRAALLAILK
SGKEPLLRFSEAFIEDPNDLLTSACHMQLEGLIGKRLGSSYASGRSSDWIKLKCKRRQEF
IIVGFTDPTGSRNAFGALLLGLHDRDSGELRYVGKVGTGFTEATLKSIHDRIKPLRTKKP
AVANPPRSAELTRVHWLKPQLLAEVAYAEMTKDGSVRHAVFHGLRDDKPASDITVEQPTI
IKNIHGKNIDAKASSAKKKAPTAPSQINSEHSKIHITHPDRVIDATSGTTKVQLAEYYAS
VAEWILPQLKDRPVALVRAPDGITGELFFQKNAERLKVPGIISLDHKLTGQPMMVINNVE
TLIGAVQINTVELHTWNATSDHLDKPDRFVLDLDPDPALPWKSMVEATQLTLTVLDELGL
KAFLKTSGGKGIHLVVPLTRKHGWDEVKNFSHAIVSHMAKMLPERFSAVSGPKNRVGRIF
IDYLRNGLGATTICAYAARTREGLPVSVPIFREEVKELKGGNLWNIQNVLGRLAEVGNEP
WADIKKTRQTITAEMRRRVGMKKL
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atggaaaagaagctcgaaaaatacaacaaaatgcgtgatttcaaggagagtccagagcct
gctggcctcacaaaatctagcaggcgcaagggcaaagcgcatgcattgcagttttgcatt
cagaagcatgatgcctcgcgcttgcattacgactttcgcttagagttggacggtacgctc
aagagttgggcggtaccaaaggggccgtcactggatcccaaggtcaagcgcctggcggtg
catgtcgaagaccatccgctggattacgctaccttcgaaggcagcatacccgaaggccac
tatggtgctggcgacgtcatcgtctgggaccgcggcatgtggattcctctgggcgacccg
gtcgaggcctacgcaaagggccgcctcaagtttgaactgcagggcgagaagctgagcggt
ctatggaacctggttcgcacgcacatgccgggcaagcaggagcaatggtttcttatcaag
catcaagacagttccgctcggcctgaagatatttacgacgtggttgtcgccgaacccgac
agcgtgatcagcgaacgggcaatcgttgccaaatcacccaacacatcaattacagccaag
gccaagcccaccaagaaagctgcagagcctgtacggcaaacaaagctctcgccactcacc
ggtgcgcgcaaggcgaaactgccgggctacatcaagccgcagctggcgactctggtggaa
aagcctcctagcggtcgatggatctatgagtgcaaattcgatggttttaggatgcttgcc
aggatagaagatcaaaaggttcgactctttacacgaaacgggcacgactggacccacaaa
ttgccaaggcaggccaaggcattgctttccttaggattgaattcagcttggctagacggt
gaaattgtggtcatcgacgaccaaggcataccggattttcaggccttgcaaaacgctttc
gaggcaggccagagtggcaatatcttctattacttgttcgatctgccctatttcaatggc
gtggacctgcgcgaggtgccggtcgaggaacgccgggctgcgctcttggcgatcctaaag
tccggcaaagagcccctactgcgtttttccgaggccttcatcgaagaccctaatgacttg
ctcaccagcgcctgtcatatgcagttggagggtctgatcggcaagcgcctcggctcgtcc
tacgcttctgggcgcagcagtgactggattaaactcaagtgtaagcgtcgccaggaattc
atcatcgttggcttcaccgatcccacaggctcacgcaatgcattcggcgccctgctcctg
gggctgcatgatcgagacagcggtgagttgcgctacgtcggcaaagtcggcaccgggttt
acggaggcgactctcaagagcatccatgatcgaatcaagcctctccgaaccaagaaacct
gcagtggctaacccgcccagaagtgcagagctcactcgtgtgcattggcttaaaccgcag
ttgctggcagaagtggcctatgccgaaatgaccaaggacggctcggtgcgtcatgcggtg
ttccatggccttcgtgatgacaagcctgccagcgacatcacggtggagcagccgactatc
attaaaaatatccatgggaaaaatatcgatgccaaagcttcctcagccaagaagaaggcc
ccgactgcgccgtctcagatcaattctgaacatagcaagatacacatcacccacccggat
cgcgtcattgacgctaccagcggcacaaccaaagtccaactcgcggaatattacgcaagc
gtggccgagtggattctcccgcagctcaaggaccgccctgtagctttagtgcgagcgcct
gatggaattaccggagaactgtttttccagaagaacgccgagcgccttaaggttcccggc
atcatctccctcgatcataaactcacgggccagccaatgatggtcattaacaacgtcgag
accttaataggggcggtgcagatcaacacagtcgagctacatacctggaacgccacctcg
gaccatctcgacaaacctgaccgcttcgtccttgacctcgacccggacccggcgctgcca
tggaaaagtatggtcgaagccacccagctgacactcacagtgctcgatgagttggggctc
aaggcgttcctcaagactagcggcggtaagggaattcacttggtggtaccgctgacccgc
aagcatggctgggatgaggtcaagaacttcagccacgctatcgtcagccacatggctaaa
atgctgcctgagcgattttccgcagtatcagggccgaaaaaccgtgtcgggcggatcttc
atcgattacctgcgcaacggattgggcgcgaccacgatctgcgcctacgcagcgcggacc
cgcgaggggctgcctgtgtcggttccgatatttcgagaagaagtgaaggagcttaagggc
ggtaacctgtggaacatacaaaatgtgcttgggcgattggctgaagtaggcaatgaacct
tgggcggacataaagaaaacccggcagacgattactgccgagatgcgccggcgggtgggc
atgaagaagctctga
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