Pseudomonas soli: O165_020155
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Entry
O165_020155 CDS
T03276
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pmos
Pseudomonas soli
Pathway
pmos03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmos00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
O165_020155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmos03019
]
O165_020155
03016 Transfer RNA biogenesis [BR:
pmos03016
]
O165_020155
Enzymes [BR:
pmos01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
O165_020155
Messenger RNA biogenesis [BR:
pmos03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
O165_020155
Transfer RNA biogenesis [BR:
pmos03016
]
Prokaryotic type
tRNA degradation factors
O165_020155
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
OB_Dis3
CSD
Motif
Other DBs
NCBI-ProteinID:
AIN60489
LinkDB
All DBs
Position
complement(4275844..4278417)
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AA seq
857 aa
AA seq
DB search
MADWQSLDPEAAREAEKYDNPIPSRELILQRLADRGEPAAREQLAEEFGLYEEDQIEALR
RRLRAMERDGQLIYTRRGTYAPVDKLDLICGRVSGHRDGFGFLIPDDGSEDLFLSPAQMR
LVFDGDRGLARVSGVDRRGRREGVLVEIISRAHESVVGRYFEEGGIGYVTPDNPKIQQEV
LVTAGRNGGAKIGQFVSIKITHWPTPRFQPQGDVVEVIGNYMAPGMEIDIALRSYDIPHV
WPQEVIKEARKFRSEVEEKDKEKRIDLRHLPFVTIDGEDARDFDDAVYCEPLGKLRMFSG
GWRLYVAIADVSSYVRLGSALDTEAQQRGNSVYFPERVVPMLPEELSNGLCSLNPHVDRL
AMVCEMTINKAGQMVDYQFYEGVIHSHARLTYNKVSSMLEHSRTREGKALREEYSAVLPD
LKSLYALYKVLLAARHTRGAIDFETQETRIIFGDDRKIDEIRPTVRNDAHKLIEECMLAA
NVATAEFLQKHNVPALYRVHDGPPPERLEKLRAFLGELGLSLHKGKDPSPKDYQALLASI
AGRPDFHLIQTVMLRSLSQAVYSVENNGHFGLNYEAYTHFTSPIRRYPDLLVHRAIRSVI
RSKVDTPHVKRAGAMSIPKARIYPYDENSLEQMGEQCSMTERRADEATRDVVNWLKCEYM
RDRVGETFPGVITAVTGFGLFIELTDIYVEGLVHVSALPGDYYHFDPVHHRLSGERSGRS
FRLGDTVEVKVMRVDLEQRKIDFEMSEKTVTAPVGRKPRAAAQPVAEQAPAVEAKISPKP
RSRKSEASEAYFPKDAVQRNAEVRKSREMKKALMGEARASGHAGGKSEKGGKSSGKPTKH
RKGPPKSGAPRKGKNKS
NT seq
2574 nt
NT seq
+upstream
nt +downstream
nt
atggccgattggcaatccctcgatcccgaggccgctcgcgaagcggaaaaatacgacaac
cctatccccagccgtgagctgatcctgcagcgcctcgccgaccgtggcgagccggctgcc
cgcgaacagctggccgaagagttcggtctttacgaagaagaccagatcgaagccctgcgc
cgccgcctgcgtgccatggagcgcgacggtcagcttatctatacccggcgcggcacctat
gccccggtggacaagctcgaccttatttgtggccgtgtctccgggcaccgtgacggcttc
ggcttcctcatccccgacgatggtagcgaggacctgttcctcagcccggcacagatgcgt
ctggtgttcgatggcgaccgcggcctggcccgggtctccggtgtagaccgccgtggccgt
cgcgaaggcgtgctggtagagatcatctcccgcgcccatgaaagcgtggtcggtcgctac
ttcgaagaaggcggcatcggctacgtaacccctgacaatccgaaaatccagcaggaagtc
ctggtcactgccggacgcaacggcggcgccaagatcggccagttcgtgtcgatcaagatc
actcactggccaaccccacgcttccagccgcagggtgatgtggtcgaggtgatcggcaac
tacatggctccgggcatggaaatcgacatcgccctgcgcagctacgacatcccgcatgtc
tggccacaggaagtgatcaaggaagcgcgcaagttccgctccgaagtcgaggaaaaagat
aaagagaagcgcatcgacctgcgtcatctgcctttcgtcaccatcgacggcgaagacgct
cgcgacttcgacgatgcggtgtattgcgaaccgttgggcaagctgcgcatgttctccggc
ggctggcgcctgtacgtggccatcgccgacgtttccagctacgtgcgcctgggctcggcg
ctggataccgaagcgcagcaacggggtaactcggtgtacttccccgagcgcgtcgtgccg
atgctgcccgaagaactgtccaacggcctgtgctcgctgaacccgcacgtcgatcgcctg
gccatggtctgcgaaatgaccatcaacaaggccggccagatggtcgactaccagttctac
gagggtgtgatccactcccacgcgcgcctgacctacaacaaggtcagcagcatgctcgag
cattcccgcactcgcgaaggcaaggcactgcgcgaggagtacagtgcggtgttgccggac
ctgaagagcctttatgccctgtacaaggtgctcctggcggcccgtcacacccgcggcgcg
atcgacttcgagacccaggaaacccggatcatcttcggcgatgaccgcaagatcgacgaa
attcgtccgaccgtgcgcaacgacgcccacaagctgatcgaagagtgcatgctggcggcc
aacgttgcgacggccgagttcctgcagaagcacaacgtgcctgcgctgtaccgcgtgcac
gacggcccgccgccggagcgtctggagaagttgcgcgcattcctcggtgagctgggcctg
agcctgcacaaaggcaaggatccttcgccgaaggattaccaggctctgctggcgagcatc
gccgggcgcccggacttccacctgatccagaccgtcatgctgcgctcgctgagccaggcg
gtgtacagcgtcgagaacaacggccacttcggcctgaactacgaggcctacacccacttc
acctcgccgatccgtcgttacccggacctgctggtgcaccgcgccatccgcagcgtgatc
cgctccaaggtggacaccccgcacgtcaagcgtgccggtgccatgagtattcccaaggcg
cgcatctacccgtacgacgagaacagtctcgagcagatgggcgagcagtgctcgatgacc
gagcgccgcgccgacgaagctacccgcgacgtggtcaactggctcaagtgcgagtacatg
cgtgatcgcgtcggcgagaccttccctggcgtgatcaccgcggtgaccggctttggcctg
ttcatcgaactgaccgacatctatgtcgaaggcctggtgcatgttagcgccctgccgggt
gactactaccacttcgatcctgtgcatcaccgcctgtccggtgagcgtagcggccgcagc
ttccgcctgggcgacacggtcgaggttaaggtcatgcgtgtcgacctcgagcagcgcaag
atcgacttcgaaatgtcggagaagaccgtcactgcaccggtcggccgcaagccacgcgct
gccgcgcaaccggtggccgagcaggcgcctgccgtcgaagcgaagatttcgcccaagccg
cgcagccgcaagagcgaggcctccgaggcgtacttcccgaaagacgcggtgcagcgcaat
gccgaggtgcgcaagagtcgtgaaatgaagaaggcgctgatgggcgaggcgcgtgccagc
ggccatgccggcggcaagtcggaaaaaggtggcaagtcatccggcaagccgaccaagcat
cgcaaggggccgcccaagtccggcgcgccacgcaagggcaagaacaagtcatga
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