Pseudomonas soli: O165_020640
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Entry
O165_020640 CDS
T03276
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pmos
Pseudomonas soli
Pathway
pmos03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmos00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
O165_020640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmos03019
]
O165_020640
Enzymes [BR:
pmos01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
O165_020640
Messenger RNA biogenesis [BR:
pmos03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
O165_020640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AIN60582
LinkDB
All DBs
Position
4387753..4389642
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AA seq
629 aa
AA seq
DB search
MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPGGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLNFISACIFGGVGMN
PQVQAMAKGVDVLVACPGRLLDLAGQGSVDLSRVEILVLDEADRMLDMGFIHDVKKVLAR
LPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALL
AHLITLGAWEQVLVFTRTKHGANRLAEYLEKHGLTAAAIHGNKSQNARTKALADFKANTV
RVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISMVAPDEEKL
LKSIERVTRQKIPDGDLMGFDASQVEAEKPEVRERQPNNGRGGRNQQPRGEGGKEGSGGR
KDKGKDKGRNKPSSEKAAEKDKSSEKQQQGQQRKPRDQKPRQQQNNGQKAVPVAAPNRDP
EEFLDDDVDNFGNRADYVSPYQNAKNQGRNRRPGGNGGQAQGQRSGGGQGQGQGRGNGQQ
RQGQGSGEKRPRNGGGGNGGARRDNNGGRARREDSSRQEPAVRNPRESQSAPVIIRKESK
LDRYPTPEQLDDLPSRPRGERPALLTRKG
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctcttgtccgcgctatcgaggctgcgggc
tatacccagcccactccggtgcaacagcgggccattcccgccgtgttgcaaggtcgcgac
ctgatggtcgccgcccagacaggtactggtaaaaccggcggcttcgcgcttccgatcctt
gagcgtctgttcccgggcggccatcccgacaagtctcaacgtcatggtccccgccaaccg
cgcgtgctggtgctgacgcccacccgtgagctggctgcccaggtacatgacagtttcaag
gtctatgcccgcgacctgaatttcatcagcgcctgcattttcggtggcgtcggcatgaac
ccgcaggtccaggccatggccaagggcgtcgacgtcctggtcgcctgcccaggtcgcctg
ctcgacctcgctggccagggcagtgtcgacctctcgcgggtcgagatcctggtgctggac
gaagccgaccgcatgctcgacatgggcttcatccatgacgtcaagaaagtgctggcgcgc
ctgccggccaagcgccagaacctgctgttctcggcaactttctccaaggacatcaccgac
ctcgccgacaaactgctgcacaaccccgagcgcatcgaggtcacgccgccgaacactacc
gtcgagcgtatcgagcaacgggtctaccgcctgccggccagccacaaacgcgccctgctg
gcgcacctgatcaccttgggcgcctgggaacaggtgctggtgttcacccgtaccaagcac
ggcgccaaccgcctggccgagtacctcgagaagcacggcctgaccgcggcggcaatccac
ggcaacaagagccagaatgcccgcaccaaggcgctggccgacttcaaggccaataccgtg
cgcgtgctggtcgccaccgacatcgccgctcgcggcctggacatcgaccaactgcctcat
gtggtcaacttcgagctgcccaatgtcgaggaagactacgttcaccgcatcggccgtacg
ggccgtgccggtcgctccggtgaagccatttcgatggtcgcgccggacgaagaaaagctg
ctcaagagcatcgagcgcgtcacccgccagaaaatcccggatggcgacctgatgggcttt
gacgcatcgcaggtcgaggccgagaagccggaagtgcgcgagcgccagccgaacaatggc
cgcggtggccgcaaccagcaacctcgcggcgaaggcggcaaggaaggcagtggcggacgc
aaggacaaaggcaaggacaagggccgcaacaagccttcgtccgagaaggccgcggaaaag
gacaagtctagcgagaaacagcagcaaggccagcagcgcaagccgcgcgaccagaagcca
cgtcagcagcagaacaacggccagaaagccgtgcctgtcgccgcacccaaccgtgaccct
gaggagttcctcgacgacgacgtcgacaacttcggcaaccgcgccgactacgtcagcccc
taccagaacgccaagaaccaggggcgcaatcgtcgcccgggcggcaacggcggccaagcc
caaggccagcgcagtggtggcggccaggggcaaggccagggtcgtggcaatggccagcag
cgccagggccagggctccggtgaaaagcgcccgcgcaacggcggcggcggcaatggtggc
gcccgacgcgacaacaacggcggccgtgcccgccgtgaagattcgtcccgccaggaaccg
gccgtgcgcaacccgcgcgagtcgcagagcgcgccagtgatcatccgcaaggaatccaag
ctggaccgttacccgacgcccgagcaactggacgacctgccaagccgcccacgcggtgaa
cgcccagcgctgctgacccgcaagggctga
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