Pseudomonas soli: O165_026685
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Entry
O165_026685 CDS
T03276
Name
(GenBank) RNA ligase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pmos
Pseudomonas soli
Brite
KEGG Orthology (KO) [BR:
pmos00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pmos03016
]
O165_026685
Enzymes [BR:
pmos01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
O165_026685
Transfer RNA biogenesis [BR:
pmos03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
O165_026685
Prokaryotic type
tRNA splicing ligases
O165_026685
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4402
Motif
Other DBs
NCBI-ProteinID:
AIN61721
UniProt:
A0A1H9SJS7
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All DBs
Position
5723791..5724996
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AA seq
401 aa
AA seq
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MNILEVAGGKPIKLWTDGVPVEDDARKQLMNTAKMPFIFKHLAVMPDVHLGKGSTIGSVI
PTVGAIIPAAVGVDIGCGMIAARTSLHARDLPDNLHGLRTAIEKAVPHGKTFGRRDQGAW
DNVPNQADQVWSGLAGRFKAITDKHPRLEKTNNRQHLGTLGGGNHFIEVCLDEADRVWFM
LHSGSRGVGNAIGNLFIELAQADMRQHMVNLPDRDLAYFEEGSRHFADYVEAVEWAQDFA
RHNRELMMQAVVAATRKVLGKAFEASLEAVNCHHNYVQKEQHFGREVLVTRKGAVSAQKG
QLGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRVMSRTKAKSRFTVEDQQRATAHVECR
KDKDVIDEIPMAYKDIDAVMQAQRELVEVVHTLRQVVCVKG
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atgaacatactcgaagtggcgggtggcaagccgatcaagctgtggaccgacggtgtgccg
gtcgaggacgacgcccgcaagcagctgatgaacacggcgaagatgccgttcatcttcaag
cacctggcggtgatgccggacgtgcacctgggcaagggctcgaccatcggcagcgtgatc
cccaccgtgggcgcgatcattccggcggcggtgggcgtggacatcggctgcggcatgatc
gccgcgcgcacctcgctgcatgcccgcgatctgccggacaacctgcacggcctgcgtaca
gccatcgagaaggccgtgccccatggcaagacctttggccgtcgcgaccagggtgcctgg
gacaacgtgccgaaccaggccgaccaggtctggagcggcctggccgggcgcttcaaggca
atcaccgacaagcatccgcgcctggagaagaccaacaaccgccaacacctggggacactg
ggcggcggcaaccacttcatcgaggtctgcctggacgaggccgaccgcgtctggttcatg
ctgcacagcggctcgcgtggcgtcggcaacgcaatcggcaacctgttcatcgaactggcg
caggccgacatgcgtcagcacatggtcaacctgccggaccgtgacctggcgtatttcgag
gaaggcagccggcacttcgccgactatgtcgaggcggtggagtgggcgcaggacttcgcc
cggcacaaccgcgaactgatgatgcaggcggtggtcgccgccacccgcaaggtgctgggc
aaagcgttcgaggccagcctcgaggcggtcaactgccaccacaactatgtgcagaaagag
cagcacttcggccgcgaggtactggtgacccgcaagggcgcggtgtcggcgcagaagggc
cagctgggcatcatccctggctccatgggcgcgaagagtttcattgtgcgtgggttgggc
aacgaggaatcgttctgctcgtgcagccatggtgcggggcgggtgatgagccgcaccaag
gccaagagccgctttacggtcgaagaccagcagcgcgccactgcccacgtggagtgccgc
aaggacaaggatgtgatcgacgagatcccgatggcctacaaggatatcgatgcagtgatg
caggcccagcgtgagttggtcgaagtggtgcacaccctgcggcaggtggtgtgtgtgaaa
ggttga
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