Pseudomonas soli: O165_027040
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Entry
O165_027040 CDS
T03276
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pmos
Pseudomonas soli
Pathway
pmos03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmos00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
O165_027040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmos03019
]
O165_027040
Enzymes [BR:
pmos01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
O165_027040
Messenger RNA biogenesis [BR:
pmos03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
O165_027040
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AIN61792
UniProt:
A0A1H9SDC9
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All DBs
Position
5798120..5799451
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AA seq
443 aa
AA seq
DB search
MNFAQLGLIEPLLRTLQTLDYTTPTPIQAKAIPAVLAGRDLMAAAQTGTGKTAGFALPVL
QRLALEGEKVASNSIRALVLVPTRELAEQVHNNVREYAENLPLSTYAVYGGVSINPQMMR
LRRGVDLLVATPGRLLDLFRQNAVKFNQVQTLVLDEADRMLDLGFAEELQSVYAALPRKR
QTLLFSATFSEQIRLLAGLALNDPLSIEVSPRNAAATTVKQWLVPVDKKRKADLFIHLMR
KQRWKQVLVFAKTRNGVDQLVERLLAEGVNADGIHGDRPQATRQRALDSFKAREIQVLVA
TDVAARGLDIDDLPLVVNLDLPIVAEDYVHRIGRTGRAGNKGEAISLVCADEVQLLATIE
TLIRQVLPRHEEPDFIPDHRVPVTDASGQVLKKPKKPKKPKENSAKRGLGRWMDSEGAGA
AAPAVKAVRKVPAFGGKPRKPKP
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atgaatttcgcccaactcggcctgatcgaaccgctgctgcgcaccttgcagacgctggac
tacaccacgcccaccccgatccaggccaaggccatccccgccgtgctcgctggccgtgac
ctgatggccgccgcccagaccggcaccggcaagaccgccggcttcgccctgccggtgctg
cagcgcctggccctggaaggggagaaggtcgccagcaactcgatccgcgcgctggtgctg
gtgccgactcgcgagctggcggagcaggtgcacaacaacgtgcgcgagtatgccgaaaac
ctgccgttgagcacctacgcggtgtatggcggggtcagcatcaacccgcagatgatgcgc
ctgcgtcgtggcgtcgacctgctggtggcgaccccaggccgcttgctcgacctcttccgc
caaaacgcggtgaagttcaatcaggtgcagaccctggtgctcgacgaagccgatcgcatg
ctcgacctgggctttgccgaggagctgcaatcggtgtacgcggcgttgccgcgcaagcgc
cagacactgttgttctccgccaccttctccgagcagatccgcctgctcgcgggcctggcg
ctgaacgatccgctgagcatcgaagtgagcccgcgcaacgccgccgcgactacggtcaag
cagtggctggtgcctgtggataaaaagcgcaaggccgatcttttcatccatctgatgcgc
aagcagcgctggaagcaggtgctggtgttcgccaagactcgcaacggtgtcgatcaactg
gtcgagcgcctgttggccgagggcgtgaatgccgacggcatccacggcgaccgtccgcag
gccacccgccagcgtgccctggacagcttcaaggcccgtgagatccaggtactggtggcc
accgatgtggccgctcgcggcctggacatcgacgacctgccgctggtggtcaacctcgac
ctgccaatcgtcgccgaagactacgtgcaccgcatcggccgtaccggccgcgcggggaac
aagggcgaggcgatttcgctggtgtgcgccgacgaggtgcaattgctggccacgatcgag
accctgatccgccaggtgttgccacggcacgaggagccggatttcatccccgatcaccgg
gtgccggtgaccgatgccagtggccaggtgctgaagaaaccgaagaagcccaagaagccg
aaggagaacagcgccaagcgcggcctggggcgctggatggacagcgagggggcgggggct
gcggcaccggcggtcaaggcggtgcgcaaggtgccggcgttcggtggcaagccgcgcaag
cccaagccttga
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