Pseudomonas monteilii SB3101: X970_18625
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Entry
X970_18625 CDS
T02973
Name
(GenBank) RNA helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pmot
Pseudomonas monteilii SB3101
Brite
KEGG Orthology (KO) [BR:
pmot00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmot03019
]
X970_18625
Enzymes [BR:
pmot01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
X970_18625
Messenger RNA biogenesis [BR:
pmot03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
X970_18625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
HA2_N
nSTAND3
AAA_25
T2SSE
ResIII
ABC_tran
AAA_30
NACHT
SRP54
AAA_23
Motif
Other DBs
NCBI-ProteinID:
AHC89315
UniProt:
V9V661
LinkDB
All DBs
Position
complement(3942165..3946070)
Genome browser
AA seq
1301 aa
AA seq
DB search
MTDHAIDKLLQNLDHAMIADRHRLRRQLHELRKRPDEAKLAQWVEKVQASCAQVTARQQS
VPTVRYDDSLPIAAKRDEIKKALAEHQVLVIAGETGSGKTTQLPKICLELGRGSHGLIAH
TQPRRIAARSVAARVAEELGTPLGGLVGYQVRFEDQSDANTLVKLMTDGILLAETQHDRF
LERYDTIIVDEAHERSLNIDFLLGYLKTLLHRRPDLKLIITSATIDLERFSKHFDGAPII
EVSGRTFPVETWYRPLTSEQDEEGNQIEDDLTVDQAILATLDELAHHERSEGKGPGDVLI
FLPGEREIRDAAEILRKAQLRHTEILPLYARLSPAEQQRIFQPHTGRRVVLATNVAETSL
TVPGIRYVIDTGTARISRYSYRAKVQRLPIEAVSQASANQRKGRCGRVEPGICVRLYSEE
DFNSRPAFTDPEILRTNLAAVILQMLHLRLGAIDAFPFIEPPDGKAISDGFNLLQELSAV
NRENQLTPIGRQLARLPIDPRLGRMLLEGARLGSLQEVLIVTSALSVQDPRERPPERQQA
ADQAHAQWKDVDSDFAALVNLWRGFEEQRQALTANPLRNWCRKNFLNYLRLREWRDAHRQ
LALICRDLQLTVNKDPSDYPKMHKAILSGLLSQIGQKTEEGDYQGARQRRFWVHPSSGLG
RKRPQWVMAAELVETTKLYARMVARIEPDWIEPLAGHLVKKNHFEPHWEKKRGQVVAYEQ
ITLYGLILVGRRPVHFGPIDPVTSRELFIREGLVGGEIQSRAKCLAANKRLLEELDELEA
KARRRDILADEETLYAFYEARLPAEIHQTATFDSWYRMGSQKDANLLIMREEDVLAREAS
EVTAAQYPDSLQVGELRLPLSYHFEPGNPRDGVTVRVPAPLLPSLPGERLEWLVPGLLEA
KCVALVRNLPKALRKNFVPVPDFVKASLARMTFGQGALPQALGQELLRMTGARVPDEAWD
ESVNLVEGHLRMNIEVVDGQGKFLGEGRDLAELTARFAAASQAALAVPRDAKSEQPVQAK
AFSEVKQTAQQKIAGLSMTVYPALVEEGGTVREGRFSTQAEAEFQHRRALQRLLLQQLAE
PAKYLRGKLPGLTELGLLYREMGRVEALVEDILLASLDSCILEGEQPLPRDGAALAGLAE
RKRGSWAEHAERLARQTLEVLKLWHGLQKRFKGKIDLSQAVALNDIKQQLGNLVYSGFVR
ETPGAWFKELPRYLKAVELRLEKLGSQVQKDRVWSGELANLWAQYKARADKHAQEGKRDE
QLTVYRWWLEEYRVSLFAQQLGTKVPISDKRLSKQWSQVEG
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atgactgaccacgccatcgacaaactgctgcaaaacctcgaccacgccatgatcgccgac
cgccatcgcctgcgccggcaattgcacgaactgcgcaagcgccccgacgaggcgaagctg
gcgcagtgggtggaaaaggtccaggcgtcctgcgcccaggtcaccgcgcgccagcagagc
gtgccgaccgtgcgctacgacgacagcctgccaatcgctgccaagcgtgacgaaatcaag
aaggccctggccgagcaccaggtgctggttatcgccggcgaaaccggctcgggcaagacc
acccagttgccgaagatctgtctcgaactgggccgtggcagccatggcctgatcgcccac
acccagccacgccggatcgccgcccgcagcgttgccgcgcgggtcgccgaagaactgggc
acgccgctgggcgggctggtcggctaccaggtgcgtttcgaagaccagagcgacgccaac
accctggtcaagctgatgaccgacggcatcctgctggccgaaacccaacacgaccgtttc
ctcgagcgctacgacacgatcatcgtcgacgaggcccacgagcgcagcctcaacatcgac
ttcctgctcggctacctgaagaccctgctgcaccggcgcccggacctgaagctgatcatc
acctcggcgaccatcgacctggagcgcttctccaaacacttcgacggcgcgccgatcatc
gaggtgtccgggcgtaccttcccggtggaaacctggtaccgcccgctgaccagcgagcag
gacgaggagggcaaccagatcgaggacgacctcaccgtcgaccaggccatcctcgccacg
ctggacgagttggcgcaccacgagcggagtgagggcaagggccccggcgatgtgctgatc
ttcctgccgggtgagcgcgagatccgtgatgccgccgagatattgcgcaaggcgcaactg
cgccacaccgagatcctgccgttgtacgcgcgcctgtcgccggccgagcagcagcgcatc
ttccagccacacaccgggcgccgtgtggtgctggccaccaacgttgcggaaacctcgctg
accgtgccgggcatccgctacgtgatcgataccggtaccgcacgcatcagccgctacagc
taccgcgccaaggtgcagcgcctgcccatcgaggccgtgtcgcaggccagtgccaaccag
cgcaagggccgctgcggccgggtcgagccgggtatctgcgtgcgcctgtacagcgaagag
gatttcaacagccggccggcgttcaccgacccggagatcctgcgcaccaacctggcggca
gtgatcctgcagatgctgcacctgcgcctgggcgcaatcgacgccttcccgttcatcgag
ccgccggatggcaaggccatcagcgatggtttcaacctgctgcaggagctgtcggcggtc
aatcgcgaaaaccagctgacgccgatcggtcgccaactggcgcgcctgccgatcgacccg
cggctgggccgcatgctgctcgaaggcgcccgcctgggcagcctgcaggaagtgctgatc
gtcaccagtgcgctgtcggtgcaagacccgcgcgaacgcccgccggagcgccagcaggcc
gccgaccaggcgcacgcgcaatggaaggacgtggattccgacttcgccgcgctggtcaac
ctgtggcgtggcttcgaggaacagcgccaggcgttgaccgccaacccgctgcgcaactgg
tgccgcaagaacttcctgaactacctgcgcctgcgcgaatggcgcgatgcccatcgccag
ctggcactgatctgccgtgacctgcagctgacagtgaacaaggacccgtccgactacccg
aaaatgcacaaggccattctcagtggcctgctcagccagatcggccagaagaccgaagag
ggcgactaccagggcgcccgccagcggcgcttctgggtgcacccgtcgtcgggcctgggg
cgcaagcgcccacagtgggtgatggcggccgaactggtcgaaaccaccaagctgtacgcc
cgcatggtggccaggatcgagccggactggatcgagccgctggccggccacctggtcaag
aagaaccacttcgaaccgcattgggagaagaagcgcgggcaggtcgtggcctacgagcag
atcactctgtacgggctgatcctggtcggccgtcggccggtgcatttcggcccgatcgac
ccggtcacctcgcgcgagctgttcatccgcgaaggcctggtgggtggcgaaatccagtcg
cgggccaagtgcctggcggccaataagcgcttgctggaagagctcgacgagctggaggcc
aaggcccgtcgccgtgacatcctggccgacgaagagacgctatatgccttctacgaagcg
cgtctgccggcggaaatccaccagacggcgaccttcgacagctggtaccgcatgggcagc
cagaaggacgccaacctgctgatcatgcgcgaggaagacgtgctggcccgtgaggccagc
gaggtcaccgccgcgcagtaccccgacagcctgcaggtgggcgaactgcgcctgccgctg
agttaccacttcgagcccgggaacccccgcgatggcgtgaccgtgcgggtaccggcgccg
ctgctgccgagcttgccgggtgagcgcctggaatggcttgtgcccggcctgctggaagcc
aagtgcgtggcgctggtgcgcaacctgcccaaggcgctgcgcaagaactttgtgccggtg
ccggacttcgtcaaggcctcgctggcgcgcatgaccttcggccagggcgcattgccgcag
gccctgggccaggaactgctgcgcatgaccggcgcccgtgtgcccgacgaggcatgggac
gagtcggtcaacctggtcgaaggccacctgcgcatgaacatcgaagtggtcgatggccag
ggcaagtttctgggtgaaggtcgcgacctggccgagctgaccgcgcgctttgcagcagcc
agccaggcagcgttggccgtgccgcgtgacgccaagagcgagcagccggtgcaggccaag
gctttcagcgaggtgaagcagaccgcgcagcagaagatcgccggcctgtcgatgactgtg
tacccggcactggtggaagagggcggcaccgtgcgcgaagggcgcttctcgacccaggcc
gaggccgaattccagcaccgccgcgccttgcagcgcctgttgctgcagcagctggccgag
ccggccaagtacctgcgcggcaagctgccggggctgaccgagctgggcctgctgtaccgt
gaaatgggccgggtcgaggcgctggtcgaggacattttgctggccagcctggacagctgc
atccttgaaggcgaacagccgctgccacgcgatggggcggccctggctggcctggccgag
cgcaagcgcggcagctgggccgagcatgccgagcgcctggcacggcagaccctggaagtg
ctgaagctgtggcatgggctgcagaagcgcttcaagggcaagatcgacctgagccaggca
gtggcgcttaacgatatcaagcaacagctcggcaacctggtgtactcaggcttcgtgcgt
gaaacccccggggcctggttcaaggagctgccgcgttacctcaaggcggtggaactgcgc
ctggagaagctgggttcgcaggtgcagaaggaccgggtgtggagcggtgagctggccaac
ctgtgggcgcagtacaaggcacgtgccgacaagcatgcccaggaaggcaagcgtgatgag
caactgacggtgtaccgctggtggctggaggaatatcgggtttcgctgtttgcccagcaa
ttggggaccaaggtgccgatttccgacaagcgattgagcaagcaatggagccaggtggag
ggctaa
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