Pasteurella multocida 36950: Pmu_08470
Help
Entry
Pmu_08470 CDS
T01729
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pmp
Pasteurella multocida 36950
Brite
KEGG Orthology (KO) [BR:
pmp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmp03019
]
Pmu_08470 (hrpA)
Enzymes [BR:
pmp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Pmu_08470 (hrpA)
Messenger RNA biogenesis [BR:
pmp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Pmu_08470 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_19
AAA_22
NACHT
T2SSE
nSTAND3
ResIII
AAA_30
nSTAND_NTPase5
ABC_tran
SLFN-g3_helicase
AAA_25
DUF6145
AAA_23
SRP54
WHD_HA2
TsaE
AAA_24
Motif
Other DBs
NCBI-ProteinID:
AET15750
LinkDB
All DBs
Position
complement(900035..903874)
Genome browser
AA seq
1279 aa
AA seq
DB search
MNVDYRQLLARIKGLSSIKNVQTQQTVATEIEEQIQLAQVRLMQRKSAVKTIEFPENLPV
SQRKAEIQKLISQHQVVVIAGETGSGKTTQLPKMCLELGRGTKGLIGHTQPRRIAARSVA
SRIAEELKSELGDLVGYKVRFNDQISDNTMVKLMTDGILLAEIQNDRFLNQYDTLIIDEA
HERSLNNDFILGYLKQLLPKRPDLKVIITSATIDVERFSKHFNNAPIIEVSGRTYPVEVR
YRPVVENEEQDQLQAILDAVDELQAEGRGDILIFMNGEREIRDTAEALQKQDLKHTEILP
LFARLSAQEQNKNFHPSGLNRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQR
LPIEPISQASANQRKGRCGRVSEGICIRLYSEEDFNSRPEFTDPEILRTNLASVILQMTA
LGLDDIDAFPFVDAPDKRNIQDGIKLLEELEVFHFVKTKFGEKRQLTQQGKQLAQLPVDP
RLAKMLLTAVKFNCLHEVMIIVSALSIQDPRERPQEKQQSADDKHRRFADKKSDFLAFLN
LWQFIQTQQKALSKNQFRRLCQKDYLNYLRIREWQDIYHQIRLTVREMGLPINSQPAEYA
QIHTALLSGLLSHIGMKESEKSQYLGARNAHFAIFPNSVLFKKQPKWVMAAELVETSRLW
GRMVADIEPEWIEPLALHLVKKSYAEPRWSKSKGAVLADEKVSLYGVPIVASRPVNYGSI
DPLLSREIFIQSALVEGDWFTKHKFFHQNRQLIKEIEDLEHKSRRRDILVDERTLFDFYD
QRIGTEVVSQRHFDSWWKKISQQDPELLNFEKAFLTKENAKQVSELDFPNFWHQGNLKFK
LTYQFEPGTDADGVTVHIPLPLLNQVEMTGFDWQIPGLRKELIIALIKSLPKALRRNFVP
APNYADAFLGRAKPLEKPLLESLIYELRRMTGVTVEAENWQLDQLPSHLKMTFRVIDDKG
KKIAESMDLDSLKFQLKDQVQESISAVADDGIEQSGIHVWNFDSLPQCYEQKKRGFTVKA
FPAIVDEKEAVGIKLFETEFEQQVAMQQGLRRLLLLNVPSPIKYLHEKLPNKSKLGLYFT
PFGRVLDLIDDCIACAVDKLIVEFGGLVWNEADFDKLRDFIRENLNEATVEIAKQVEQIL
ILTYELNKRLKGKMDFTMAFALSDIKAQLNGLIYQGFVQKTGYTRLNDLQRYLQAIDKRI
DKLLQDVNRDRAAMLRVEQVSQAYQQLLAKLPKSKPHSDEVKEIPYMIEELRVSLFAQQL
GTKYPISDKRILNVIAAIS
NT seq
3840 nt
NT seq
+upstream
nt +downstream
nt
atgaatgtggattatcgccagttgttggcacgtattaaggggctatccagcattaaaaat
gtacaaacgcaacaaacggttgccactgaaattgaagagcagattcaactcgcacaagtg
cgtttaatgcaacgtaaaagtgcggtcaaaacaattgaatttccagaaaatttaccggtt
agccaacgcaaagcagaaattcaaaaattgatttcacaacatcaagttgtggtgattgcg
ggagagacgggctcgggtaaaactacgcaattacccaagatgtgtttggaattagggcgc
ggaacaaaaggtttaattgggcacacacaacctcgtcgaatcgccgcacgttctgtggca
agccgtattgccgaagaattaaaaagcgagctgggcgatcttgtgggttataaggtacgt
tttaacgatcaaatcagtgataatactatggtcaaattgatgaccgatggaattttgtta
gctgaaattcaaaacgatcgttttttgaatcaatatgatacgctgattattgacgaagca
cacgaacgtagcctgaataatgattttattctaggttatttaaaacaacttctgccaaaa
cgtcccgatctgaaagtgatcattacttctgctaccattgatgtggaacgtttttctaaa
cattttaacaatgctccaattattgaagtatcaggtagaacttatccagtggaagtgcgt
tatcgtcccgtggtcgaaaatgaagagcaagatcaattgcaagccattttagatgcggtg
gatgaactgcaagcagaagggcgtggcgatatcttgatttttatgaatggcgagcgagaa
attcgtgataccgcagaagcattgcaaaaacaagatttaaaacacacagaaatcctaccg
ctctttgctcgcttgtcagcacaagaacagaataaaaattttcatccatcaggcttaaac
cgcattgtgcttgccaccaacgtggcagaaacctccttaacggtaccggggatcaaatat
gtgatcgatccgggtactgccagaatctcccgttatagttaccgcactaaagtgcagcgt
ttaccgattgagccgatttcacaagcgtccgctaatcaacgtaaaggacgttgcggacgg
gtcagtgaagggatttgtattcgtttatattcagaagaggattttaacagccgtcctgaa
tttaccgatcctgaaattttacgcaccaatttagcctcggtgattttacaaatgaccgca
ttgggcttagatgatattgatgcctttccctttgtggatgcgccggataaacgcaatatc
caagacggcattaaactcctcgaagagctggaagtgtttcattttgtgaaaaccaaattt
ggcgaaaagcgtcaattaacacaacagggtaaacaattagcgcagctacccgtggatcca
cgtttagccaaaatgttgttgactgcggtgaaatttaattgtttacatgaagtgatgatt
atcgtgtctgcgctttctattcaagatccccgtgaacgtccgcaggaaaaacaacaatct
gctgacgataaacatcgccgttttgccgataaaaaatccgattttctcgcctttttgaat
ttatggcaatttatccaaacacaacaaaaagcattatcgaaaaatcaattccgccgtttg
tgccaaaaggattatttaaactatttaagaatccgagaatggcaggatatttatcatcaa
attcgtttgacggtgcgtgaaatgggcttgccgattaattcacaacctgcagaatatgcc
caaattcataccgcacttttgagtggtttactttcccatattggcatgaaagaaagtgaa
aaaagccaatatttaggtgcgcgtaatgcccattttgcgatttttcctaattctgtgctg
tttaaaaaacagcccaaatgggtcatggctgcggaattggtggaaacctcaaggctttgg
ggacgaatggtggcggatattgaaccagaatggatcgagcctctagccttgcatttagtg
aaaaaatcctacgcggagcctcgctggtcaaagtctaaaggggcggtgctggcggatgaa
aaagtgagcctttatggtgtacctattgtggcaagtcgtccagtgaattatggatcgatt
gatccactgcttagtcgtgaaatttttattcaatctgcgctggtggaaggagattggttc
acgaaacataagtttttccaccaaaatcgtcaactgatcaaagagatcgaagatctagaa
cataaaagccgtcgtcgcgatattttagtggatgaacggacattgtttgacttttatgat
caacgcattggcacggaagtggtgtcgcagcgccattttgatagttggtggaaaaagata
agccaacaagatcctgaattactcaattttgaaaaagcctttttaaccaaagaaaatgcg
aaacaagtcagtgaattggatttcccaaatttctggcaccaaggcaatttgaaatttaag
cttacttatcaatttgaacccggtacggatgccgatggtgtgacagtacatattccattg
cctttattaaaccaagtggaaatgacggggtttgattggcaaattccgggattgcgtaag
gaattaattattgccttaattaaatctttaccgaaagccttacgtcgtaattttgtgccc
gcaccgaattatgccgatgcctttttaggacgagctaaaccccttgaaaaaccgctttta
gagagtttgatttacgagcttcgtcgtatgacaggggtgacggtggaagcagaaaactgg
caattggatcagttaccaagtcatttaaaaatgacctttagagtgattgatgataaaggc
aaaaaaattgcggaatccatggatttagacagccttaaattccaattaaaagatcaagta
caggaaagcatttctgcggtagcggatgatggcattgagcaaagtggtattcacgtttgg
aattttgacagcttgccacaatgctatgagcagaaaaaacgcgggtttactgtgaaagct
ttcccagcgattgtagatgaaaaagaagcggtgggtattaagctctttgaaacagaattt
gaacagcaggtcgcaatgcaacaaggcttacgccgtttattgttactcaacgtgccttca
ccaatcaagtatttgcacgaaaagctaccaaataaatcgaaactcggcttgtatttcacg
ccatttgggcgagtgttagatcttattgatgactgtatcgcctgtgcggtggataagttg
attgtggagtttggtggattggtttggaacgaggcggatttcgacaagctacgggatttt
attcgtgaaaatttaaatgaagctaccgtagaaattgccaaacaagtagaacaaatcctc
atactgacttatgaactaaacaaacgcttaaagggcaaaatggatttcaccatggcattt
gccttatccgatattaaagcacagctcaatggcttgatttaccaaggctttgtgcagaaa
acgggttatacacgcctaaatgatttacaacgctatttgcaggccattgataaacggatt
gataaattattgcaagatgtgaatcgtgatcgtgctgcgatgttaagggtagagcaagtt
agccaagcctatcaacagctactggcaaaactgccaaaatccaaaccgcactctgatgag
gtgaaagaaatcccttatatgattgaggaattacgcgtcagtttattcgcgcaacaactc
ggcaccaaatacccaatttcagacaaacggattttgaatgtgattgctgcgatcagttaa
DBGET
integrated database retrieval system
