Paenibacillus mucilaginosus 3016: PM3016_1914
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Entry
PM3016_1914 CDS
T01757
Name
(GenBank) DEAD/DEAH box helicase domain-containing protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pmq
Paenibacillus mucilaginosus 3016
Pathway
pmq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PM3016_1914
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmq03019
]
PM3016_1914
03009 Ribosome biogenesis [BR:
pmq03009
]
PM3016_1914
Enzymes [BR:
pmq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PM3016_1914
Messenger RNA biogenesis [BR:
pmq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PM3016_1914
Ribosome biogenesis [BR:
pmq03009
]
Prokaryotic type
rRNA helicases
PM3016_1914
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
DeaD_dimer
AAA_19
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AFC28818
UniProt:
H6NJ56
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All DBs
Position
2145702..2147315
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AA seq
537 aa
AA seq
DB search
MKTFSEFGLEPKVLRAITEMGFEESTPIQEKAIPVALEGRDLIGQAQTGTGKTAAFGIPL
VNKIDVKEEKIVALIMCPTRELAIQVAEEIEKLGRFKGIRSLPIYGGQDIVKQIRGLRKK
PQIIIGTPGRLLDHINRKTIKLDDVQTVILDEADEMLDMGFMDDIKSILSLVPEERNTML
FSATMPVNIQKLAQQFLKDPEHVSVIPKQVSAPLIDQAYIELHERQKFEALCRLIDMEAP
ELAIIFGRTKRRVDELSEALQKRGYAAEGLHGDLSQNQRDNVMRKFRDGSIDVLVATDVA
ARGLDVSGVTHVINFDLPQDPESYVHRIGRTGRAGKEGAAYTFVTPREIDHLHFIEKITR
HRITKKPIPSLAEAIEGKQKVTAERVLDVLQKDEHNEYKGLAISLLEHHDSVHLLAAALK
LLTGGDKKEVDIELTPEDPIRAKKRRPDVRSNGRRPSGSYGTAGGARRNDRPYGGGGREG
GGYRGNREGGRREGGSYGGGSREGGYRGSRDGGGYRGNRDGGSNYSRPSNRSEETLV
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaacatttagcgaatttggcctagagcctaaggtactgcgcgccatcacggagatg
gggttcgaggaatccacacccatccaggagaaagccattcctgtagcccttgaaggccgt
gacctgatcggccaggcgcagaccggtacagggaagaccgctgctttcggtatcccgctg
gtgaacaagatcgacgtgaaggaagagaaaatcgtcgctctgatcatgtgtcctacgcgc
gagctggctatccaggtcgcggaagaaatcgaaaagctcggacgcttcaaaggcatccgt
tccctgccgatctacggcggacaggacatcgtgaagcagatccgcggcctgcgcaagaag
ccgcagatcatcatcggtacgccgggacgtctcctcgaccatatcaatcggaagaccatt
aagctggatgacgtgcagaccgtcattctcgatgaagctgacgaaatgcttgatatgggc
ttcatggatgacattaagtccatcctgagccttgttcctgaagagcgcaacacgatgctg
ttctcggccaccatgcccgtcaacatccagaagctggcccagcagttcctgaaggatccg
gagcatgtctcggtcattcctaagcaggtttccgctcctctgatcgaccaagcttacatc
gagctgcacgagcgtcagaagttcgaagcgctctgccgcctcatcgatatggaagctcct
gagcttgccatcatcttcggccggacgaagcgccgggtggatgagctttccgaagccctc
cagaagcgcggttatgcggcagagggcctgcacggcgacctgtcccagaaccagcgtgac
aacgtgatgcgcaaattccgtgacggcagcatcgacgtgctcgtagctactgacgtagcg
gcacgcggtctcgacgtatcgggcgttacgcacgttatcaactttgaccttccgcaggat
ccggagagctatgttcaccggatcggccgtacgggccgtgcgggcaaggaaggcgcagct
tataccttcgttacgccgcgcgagatcgatcacctgcacttcatcgagaagatcacgcgt
caccgcatcacgaagaagcctataccaagcctggcggaagccatcgaaggcaagcagaag
gtaacggctgagcgcgtcctggatgttctccagaaagacgagcacaacgaatacaagggt
ctggccatctccctgctcgagcatcatgattccgtgcatctgcttgcagcggctctcaag
ctgctgacgggcggagacaagaaggaagtcgatatcgagctgacaccggaagatccgatc
cgtgcgaagaagagaagaccggatgtgcgcagcaacggtcgtcgtccttccggctcttat
ggtacggcaggcggcgctcgccgtaatgaccgtccatacggcggcggcggacgcgagggc
ggcggctaccgcggcaaccgcgaaggtggacgccgtgaaggcggaagctatggcggcggc
agccgtgagggcggataccgtggcagccgtgacggcggcggctaccgcggcaaccgtgac
ggcggcagcaactactcccgtccgtcgaaccggagcgaagaaacactggtataa
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