Paenibacillus mucilaginosus 3016: PM3016_4944
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Entry
PM3016_4944 CDS
T01757
Name
(GenBank) Cytochrome c heme-binding site protein
KO
K10979
DNA end-binding protein Ku
Organism
pmq
Paenibacillus mucilaginosus 3016
Pathway
pmq03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pmq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PM3016_4944
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmq03400
]
PM3016_4944
DNA repair and recombination proteins [BR:
pmq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PM3016_4944
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ku
SLX1_C
SLX9
SpmSyn_N
Motif
Other DBs
NCBI-ProteinID:
AFC31676
UniProt:
H6NLW1
LinkDB
All DBs
Position
complement(5944155..5945024)
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AA seq
289 aa
AA seq
DB search
MQTLWKGAVSFGLVNVPVKMYTATQENDIPMRMLHKEHKVPIHYSRTCPKCAEEVKWSDI
VKGYEYEPGKYVTFEKEELEELASETSREIRILDFVDLEEIDPIYFQKTYYLAPEETGTH
AYGLLVEALKSTEKIGIANIALRGKGSLAALRVIGDVLSLVTLYYEEEIREKEEIPNFPE
PAKVDKRELEMAKSLIEQLSAPFDPGKYEDEYRERLLQAIEQKVEGREITTAPEEKEKKV
VNLMEALQASLNEMKAAQSTDRGTQRAPASGQGKPKTRRAKPRSKRTGA
NT seq
870 nt
NT seq
+upstream
nt +downstream
nt
atgcagacactgtggaaaggggccgtgagcttcggactcgtcaacgtgcccgtcaagatg
tacaccgccacccaggagaacgacatcccgatgcggatgctgcacaaggagcacaaggtg
ccgatccactattcccgcacctgccccaaatgcgcggaggaggtcaagtggagcgacatc
gttaagggctatgaatacgagcccggcaaatacgtaaccttcgagaaggaggagctcgag
gagctcgcctccgaaacgtcgcgggagatccgcatcctcgattttgtggatctggaggag
attgatccgatctattttcagaaaacgtattatctcgctcccgaggagacgggcacccat
gcctacggcctgctggtggaagcgctgaagagcacggagaagatcggcattgcgaatatt
gcgctgcgcggcaagggcagcctggcggcgctccgggtcatcggcgatgtgctgtcgctc
gtcacgctctactatgaggaggagatccgggagaaggaggagattccgaacttcccggag
cccgccaaggtggacaagcgggagctcgagatggcgaagtcgctgatcgagcagctgtcc
gcaccgttcgatcccggcaagtatgaggatgaataccgggagaggctcctgcaggccatc
gagcagaaggtcgagggccgggagattacgaccgcaccggaggaaaaggagaagaaagtc
gtcaacctgatggaagccctccaggcgtcgctgaacgagatgaaggcggcccagtcgacg
gaccgggggacgcagcgcgccccggcttccggccaggggaagccaaagacccgccgggcc
aagccgcgctcgaagcggacgggagcgtaa
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