Paenibacillus mucilaginosus 3016: PM3016_5106
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Entry
PM3016_5106 CDS
T01757
Name
(GenBank) Pnp
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pmq
Paenibacillus mucilaginosus 3016
Pathway
pmq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PM3016_5106
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmq03019
]
PM3016_5106
03016 Transfer RNA biogenesis [BR:
pmq03016
]
PM3016_5106
Enzymes [BR:
pmq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
PM3016_5106
Messenger RNA biogenesis [BR:
pmq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PM3016_5106
Transfer RNA biogenesis [BR:
pmq03016
]
Prokaryotic type
tRNA degradation factors
PM3016_5106
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH-I_KHDC4-BBP
S1_RRP5
OB_RRP5_4th
SPATA25
CsrA
Motif
Other DBs
NCBI-ProteinID:
AFC31830
UniProt:
H6NPC0
LinkDB
All DBs
Position
complement(6128220..6130322)
Genome browser
AA seq
700 aa
AA seq
DB search
MQKQVQMDLGGRTLILETGRLAKQANAAVVAKYGDTVILCTVTASSEPKDLDFFPLTVNY
EERLYSVGKIPGGFIKREGRPSEKAILASRLTDRPIRPLFPEGFRNDVQIANIVMSVDQD
CSPEIAAMIGTSAALSISDVPFNGPVGGVIVGRVDGQFVINPTLEQADKSDIHLVVAGTK
DAIMMVEAGADEVPEEVMLEAIMFGHDEIRKIVAVQEQLVAEAGKPKMEVKLHAVDAEVS
AAVREFAQARLIEAIKVQEKHARQEAIDAVNAEAKEHFALVYAETPEKMADVKETLYDIV
KEEVRRLITHDKVRPDGRALDEIRPIECDISLLPRTHGSGLFTRGQTQALSICTLGALGD
VQILDGIDLEESKRFMHHYNFPPFSVGEARPLRPPGRREIGHGALGERALEPIIPNETDF
PYTIRLVSEVLESNGSTSQASICASTLALMDAGVPIKAPVAGVAMGLIKDGEHFSILSDI
QGMEDHLGDMDFKVAGTAKGVTALQMDIKIDGIDRSILTQSLEQAKVGRMHILNKMLERI
QEPKTSLSKYAPKILTMQINPDKIRDVIGAGGKIINKIIEETGVKIDIEQDGRVFIASSN
QEMNEKARQIIEGIVREVIVGEIYLGTVKRIEKFGAFVEILPGKDGLVHISQLSTERVAK
VEDAVKIGDQITVKVTEIDGQGRVNLSRKAVLTAEAPAQT
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atgcagaagcaggtgcagatggatctcggcggacgtacgctgatcctcgaaaccgggcgt
ctggccaagcaggccaacgcggccgtcgtggcaaagtacggcgatacggtgattctatgt
acggttacggcttcgtccgaaccgaaagatctcgatttcttcccgctcaccgtgaactac
gaagagcggttatactctgtgggtaaaatcccggggggctttatcaagcgtgaaggccgt
ccgagcgagaaagcgattctggcgagccgtctgacggaccgtccgatccgcccgctgttc
ccggaagggttccgcaacgacgtgcagatcgccaacatcgtcatgagcgtggatcaggac
tgctctcccgagattgcagcgatgatcggaacctcggcggcgctgagcatctccgacgtg
ccgtttaacggccctgtaggcggtgtgatcgtcggccgtgtggatggtcagttcgtcatc
aatccgacgctggagcaggccgataagagcgatattcacctcgtggtagcgggtaccaaa
gacgccatcatgatggtggaagcgggcgccgacgaagtgccggaggaagtgatgctcgag
gcgatcatgttcggccacgatgagatccgcaagatcgttgcggtgcaggagcagctcgtc
gctgaagccggcaagccgaagatggaagtgaagctgcacgcggtggacgcggaagtcagc
gcagcggtgcgtgaattcgcacaggcccgcctgatcgaagcgatcaaggtgcaggagaag
catgcccgccaggaagcgatcgatgcggtgaatgccgaagcgaaggagcactttgccctc
gtatacgccgaaacgccggagaaaatggccgacgtcaaggaaaccctgtatgatatcgta
aaagaagaagtcagacgcctcatcacgcatgacaaagtacgtccggacggccgtgccctc
gatgagatccgtccgatcgaatgcgacatctccctgctgccccgcacgcacggctccggc
ctgttcacgcgcggtcaaacgcaggcgctcagcatctgcaccctcggtgcgctcggcgac
gtccagattctcgacggcatcgacctcgaagaatcgaagcgcttcatgcaccactataat
ttccctccgttctccgtaggggaagccagaccgcttcgtcctccgggccgccgcgaaatc
ggccacggtgcactgggtgagcgcgcactcgagccgatcattccgaacgaaaccgacttc
ccgtacacgatccgtctcgtatccgaagtgctggaatccaacggttccacctcccaggca
agtatctgcgcgagcacgctggctctgatggatgccggggtaccgatcaaggcgccggtt
gccggtgtagccatgggtctgatcaaggacggcgagcatttctcgattctctccgatatt
caggggatggaagaccacctcggcgatatggacttcaaggtagccggtaccgccaaaggc
gtaacggcactgcagatggacatcaagatcgacgggatcgaccgcagcatcctgacccag
tcgctggagcaggcgaaagtcggccggatgcacatcctgaacaaaatgctggagcgcatc
caggagccgaagacttcgctttcgaagtacgcgccgaagatcctcacaatgcagatcaat
ccggacaagatccgcgatgtcatcggagcgggcggcaaaatcatcaacaagatcatcgaa
gaaaccggcgtcaagatcgacatcgaacaggacggccgcgtcttcatcgcttcttcgaat
caggagatgaacgagaaggcacgccagatcatcgagggcatcgttcgcgaagtgatcgtc
ggcgagatttacctcggtacggtcaagcggattgagaagttcggcgcattcgtcgaaatc
ctgccgggtaaagacggcctcgtgcacatctcgcagctgtcgaccgaacgggtagccaag
gtggaagacgccgtgaagatcggcgaccagatcacggtgaaggtgaccgagattgacggt
caaggccgcgtcaacctgtcccgcaaagccgtactgaccgctgaggcaccggcccaaacg
tag
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integrated database retrieval system
