Paenibacillus mucilaginosus 3016: PM3016_5170
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Entry
PM3016_5170 CDS
T01757
Name
(GenBank) TopA
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pmq
Paenibacillus mucilaginosus 3016
Brite
KEGG Orthology (KO) [BR:
pmq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmq03032
]
PM3016_5170
03400 DNA repair and recombination proteins [BR:
pmq03400
]
PM3016_5170
Enzymes [BR:
pmq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PM3016_5170
DNA replication proteins [BR:
pmq03032
]
Prokaryotic type
DNA Topoisomerases
PM3016_5170
DNA repair and recombination proteins [BR:
pmq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PM3016_5170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Zn_ribbon_RPB9
Toprim_4
DUF7340
Auto_anti-p27
Zn_ribbon_3
Toprim_3
Motif
Other DBs
NCBI-ProteinID:
AFC31890
UniProt:
H6NQ66
LinkDB
All DBs
Position
complement(6189580..6191685)
Genome browser
AA seq
701 aa
AA seq
DB search
MADSLVIVESPAKAKTISKYLGSKYIVKASMGHIRDLPKSQIGVEVKKNFEPKYITIRGK
GSVLKELKDASKRVKKVYLAADPDREGEAIAWHLAHYLELSDQDACRVVFNEITKQAVKD
AFKTPRKINQDLVNAQQARRILDRLVGYKISPLLWKKVKKGLSAGRVQSVAVKLIYDREN
EIKAFEPEEYWTITAKLAANKSDFEAKFYSVNGEKKELKSQSEVNEVLALLGGSDFVVSE
VKEKERLRNPSPPFITSSLQQEAARKLNFRAAKTMSVAQQLYEGIDLGSEGTVGLITYMR
TDSTRISPVAQEEAKEYITGKYGEAYYPAEPRNYVKKNANAQDAHEAIRPSSVLREPESI
KAHLSRDQFRLYKLVWERFVASQMASAVLDTMTVDLNAGPVVFRAVGSKIKFHGFMKVYV
ESSDEGAADAAADDDKFLPPLKQGDEAKPQAIDPKQHFTQPPPRYTEARLVKALEEMGIG
RPSTYAPTLETIQKRGYVAIEEKKFVPTELGELVIQQMIEFFPEILDVEFTAHMEEGLDH
IEEGKEDWVRVLSEFYDSFEKRLEVAEEEMEKIEIQDEVSDEICEKCGNHFVYKMGRFGK
FLACSGFPDCRNTKPIVKDTGVTCPSCHEGKIIERRSKKGRIFYGCDRYPACEFVSWDKP
VEQPCPKCGALLVEKRNKSGTFIQCVSCDFKEEAKEDDRED
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atggccgattcgctagtcattgtggagtcacccgcaaaagccaaaaccatatccaaatat
cttggcagcaaatatatcgtaaaagcgtcgatgggtcatatacgcgatctgcccaaaagt
caaatcggggtcgaagtaaaaaagaattttgaaccgaaatatattacgatccgcggcaag
ggctccgtgctcaaagagctgaaggacgccagcaagcgtgtcaaaaaagtctatctggcg
gctgacccggatcgcgaaggggaagcgatcgcctggcatctggcgcattatctcgagctg
tccgatcaggacgcctgccgcgtagtgttcaacgagatcacgaagcaggcggtcaaggac
gcgttcaagacgccccgcaagataaaccaggatctcgtcaacgcccagcaggcccgccga
attctggaccggctcgtaggctacaagatctcgccgctgctgtggaagaaggtcaagaag
ggcttatcggccggacgcgtgcagtccgttgcggtcaaactcatctacgaccgggagaat
gagatcaaggcattcgagcccgaagagtactggacgattacggcgaagctggccgcgaac
aaatccgacttcgaagccaagttctacagcgtgaacggcgagaagaaagagctgaagagc
cagtccgaggtcaatgaagtgctggccctgctcggcggatccgattttgttgtaagcgaa
gtcaaagagaaagagcgcctgcgcaacccgtcgcctccgttcattacgagctccctgcag
caggaagcggcgcgcaagctgaacttccgtgcggcgaagacgatgtcggtggcacagcag
ttatatgaaggaattgatctgggcagcgagggaacggtcggtcttatcacgtacatgcgt
acggactccacccgcatctcgcctgtagcccaggaagaagccaaggaatacattaccggc
aaatacggggaagcctactatccggccgaaccgcgcaattacgtcaagaagaatgccaat
gcccaggatgcgcacgaagcgatccgtccgagctccgtgctccgggagccggaatccatc
aaggctcacctgagccgggaccagttccgtctctacaagcttgtgtgggagcggttcgtc
gcctcccagatggcgtcggccgtcctcgatacgatgacggtggacctgaacgccggtccg
gtggtgttccgcgcggtaggctccaagatcaagttccacggcttcatgaaggtctacgtg
gaaagcagtgacgagggggctgccgatgcggcggcggatgacgacaagttcctgcctccg
ctgaagcagggcgatgaagcgaagccgcaggccatcgatccgaagcagcatttcacccag
ccgccgccgcgatatacggaagcacggctcgtgaaagcgctggaggagatgggcatcggc
cgtccgagtacgtacgcaccgacgctggagacgatccagaagcgcggctacgtggcgatc
gaggagaagaagttcgtgccgaccgagctcggggagcttgtgatccagcagatgatcgag
ttcttcccggagatcctggacgtggaattcacggcccacatggaagaaggactcgaccac
attgaggaaggcaaggaagactgggtccgggtgctcagcgaattctatgattcgttcgag
aagcggctcgaggtcgcggaagaagaaatggagaagatcgagatccaggacgaagtgtcc
gatgagatctgcgagaagtgcgggaaccattttgtatacaaaatgggacgcttcggcaaa
ttcctcgcctgctccggcttcccggactgccgcaacacgaagccgatcgtcaaggatacc
ggcgtcacgtgtccaagctgccacgaagggaagatcattgagcggcgcagcaagaaaggg
cgcatcttctacggctgcgaccggtatccggcctgcgagttcgtctcgtgggataagccg
gtggagcagccctgtcccaaatgcggggcgctgctcgtcgagaagcggaacaagtccggg
acgttcatccagtgcgtctcctgcgactttaaggaagaagccaaggaagatgaccgggag
gattaa
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