Paenibacillus mucilaginosus 3016: PM3016_7074
Help
Entry
PM3016_7074 CDS
T01757
Name
(GenBank) RpoC
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pmq
Paenibacillus mucilaginosus 3016
Pathway
pmq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pmq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PM3016_7074
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmq03021
]
PM3016_7074
03400 DNA repair and recombination proteins [BR:
pmq03400
]
PM3016_7074
Enzymes [BR:
pmq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PM3016_7074
Transcription machinery [BR:
pmq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PM3016_7074
DNA repair and recombination proteins [BR:
pmq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PM3016_7074
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AFC33658
UniProt:
H6NS29
LinkDB
All DBs
Position
complement(8293841..8297461)
Genome browser
AA seq
1206 aa
AA seq
DB search
MIDVNNFEYMKIGLASPDKIRSWSRGEVKKPETINYRTLKPEKEGLFCEKIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRQKVRRERMGHIELAAPVSHIWYFKGIPSRMGLALDM
SPRSLEEIIYFASYVVTDPGDTPLEKKQLLSEKEYRSYREKYGYAFQAGMGAEAVKKLLQ
DIDIEKEVEMLKEELKTAQGQRRNRAIKRLEVMEAFRNSKNMPEWMVLDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPSLRMYQCGLPKE
MALELFKPFVMKELVNKGLAHNIKSAKRKVERVSPEVWDVLEEVIKEHPVLLNRAPTLHR
LGIQAFEPILVEGRAIKLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLAAGNIL
NPKDGKPVVTPSQDMVLGSFYLTTENKNAKGSGTILRTVAEAVSLYHRGDAALHARVAIP
ARALGKESFTPEQQEAMLVTTIGKIIFNEIYPKDFPYINEATKANLLNGPSDNYFVFGKG
QDIRKAMDELPETKAVGKDYLGTIIAECFRKYHTTQTSIILDDIKQLGFTYSTRAGITIA
VADVVVPQEKTKIMQESDEKVSVVTNQYRRGLITDDERYDRVIAIWSKAKDELTDILMRS
LDKYNSINMMVESKARGNKSQITQLGGMRGLMANPSGKIIELPIKSNFREGLTVLEYFIS
THGARKGLADTALRTADSGYLTRRLVDVAQDVIVRDEDCGTDKGFLVSRIQDGKEVIEDL
YDRIEGRYSFETVRHPETGDIIVNRNELIDSTVADQIIAAGITKLQIRSVLSCRSKHGVC
KKCYGRNLATGQFVEIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEL
FEARNPKGQAIITEIDGVVKEIREAKDRREIEVQGEAESKTYNVPYGSRIRVTLGQNVEA
GDELTEGSIDPKEMLRIKGIRGVQNYILQEVQRVYRNQGVEINDKHVEVMIRQMLRKIRI
VDAGNTTLLPGSFVDMHEYEEANKVALFAGEEPAVAKPVLLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKVDQLLGLKENVIIGKLIPAGTGMSRYRNIRITDPNAEPLDEEVTEA
EAVTVE
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
ttgatcgacgtcaacaattttgagtacatgaaaatcggtttggcatctccggataagatc
cgttcgtggtccagaggtgaagtcaagaagccggagacgattaactatagaacgctgaag
cctgagaaagaaggcctgttctgcgagaaaatcttcgggcctacgaaggactgggaatgt
cactgcggtaaatacaagcgtgtccgttacaaaggtgtcgtttgcgaccgctgcggcgta
gaagttacccgccagaaggtacgccgtgagcgtatgggccatatcgagctcgccgcaccg
gtgtcccatatctggtacttcaagggcatcccgagccggatgggtctggctctggatatg
tccccgcgctcgctcgaagagattatttattttgcatcctacgtggttaccgatccaggt
gatacgccgctcgagaagaagcagctgctctccgagaaggagtaccgcagctaccgcgag
aagtatgggtatgcgttccaggcaggcatgggagcagaggctgtcaagaagcttcttcag
gacatcgacatcgagaaggaagtcgagatgctgaaggaagagctgaagacggctcaaggc
cagcgccgcaaccgtgcgatcaagcgtcttgaggttatggaagcattccgtaactccaag
aacatgccggagtggatggtgcttgatgtcctcccggtcattccgccggaactgcgtccg
atggtacagctcgacggcggccgttttgcgacgtccgacctgaatgacctgtaccgccgc
gtaatcaaccggaacaaccgtctgaagcgtcttctggacctcggagcgccggatattatc
gtgcagaacgagaagcgtatgcttcaggaagccgttgatgctctgattgacaacggccgc
cgcggccgtccggtcaccggaccgggcaaccgaccgctcaaatctctcagccacatgctg
aagggtaagcagggacgtttccgtcagaaccttctgggtaagcgtgtagactactcgggc
cgttcggttatcgtagtaggacccagcttgagaatgtatcagtgcggacttccgaaagag
atggcactggaactcttcaagccgttcgtcatgaaggagcttgttaataagggcctcgcc
cacaacataaagagcgcgaagcgcaaggtagagagagtctctccagaagtttgggatgtg
cttgaagaagtcattaaggagcatccagtccttctgaaccgtgcccctacgcttcaccgt
cttgggattcaggcattcgaaccgatcctggtcgaaggccgtgcgatcaaactgcatccg
ctcgtatgtacggcttacaacgctgacttcgacggcgaccagatggccgttcacgtgccg
ctgtctgccgaagctcaagctgaagcgcgcctgctgatgctggctgccggcaacatcttg
aacccgaaggacggcaagcctgtcgttacaccttcgcaggatatggtcctcggatcgttc
tacctgacgaccgagaacaagaatgccaaaggttcgggtacgatcctgcgcaccgtagcg
gaagccgtatctctttatcaccgtggagatgctgcgcttcatgctcgtgtagccatccct
gccagagcgcttggcaaggaaagctttacgcctgagcagcaggaagctatgctcgttacc
accatcggtaagattattttcaacgaaatctatccgaaggacttcccatacattaacgaa
gcaaccaaggcgaacctcctgaacggtccgtctgataactacttcgtattcggtaagggc
caggacatccgtaaagcaatggatgaactgcccgaaaccaaagctgtgggcaaggattac
ctggggacgatcattgcggagtgcttccgcaaatatcacacgacccaaacatcgattatc
ctggatgatatcaagcagctgggctttacgtattccacgcgtgcggggattacgattgcc
gttgcggacgttgtcgtaccgcaagagaagacgaagatcatgcaggagtccgatgagaag
gtcagcgtggtaacgaaccaataccgccgtggtctcattacggacgacgagcgttatgac
cgtgttattgccatctggagcaaagcgaaggatgaactgacggatatcctgatgagatcc
ctcgacaagtacaattccatcaacatgatggtggaatccaaagcgcggggtaacaaatcg
cagatcacccagctgggcggtatgcgtggtctcatggcgaacccgtccggtaaaatcatc
gagctcccgatcaagtcgaacttccgtgaaggcctgacggtactcgagtacttcatctcg
acgcacggtgcccgtaaaggtctcgccgatacggcgcttcgtacagcggactcgggttac
ttgacccgtcgtctcgttgacgtggcccaggacgttatcgtacgtgatgaagattgcggt
acggacaaaggcttcctcgtatcccggattcaggacggcaaagaggttattgaggatctc
tatgaccgtattgaaggccgttattccttcgagaccgtacgtcatccggaaaccggcgat
atcattgtgaaccgcaacgaactgatcgattctacggttgctgatcagattatcgcggca
ggcattaccaagcttcagatccgctccgtactcagctgccgctccaagcacggcgtatgc
aaaaagtgctacggtcgtaacctggcaacgggccagttcgtcgaaatcggggaagctgta
ggtattattgcagcccaatccatcggggaaccgggaacccagctgacaatgcgtacgttc
catacagggggcgtagcaggggatgatatcacgcaaggtttgccgcggatccaggagctg
ttcgaagcccgtaatccgaagggtcaagcgatcatcaccgagatcgacggtgtggtaaaa
gaaattcgcgaagcaaaagaccgcagagaaatcgaagttcaaggcgaagcggaatccaag
acttacaacgttccttacggctcgcgtattcgtgttaccctcggccagaacgtggaagca
ggggatgagctgacggaaggttccatcgacccgaaagaaatgctgcgcatcaaaggcatc
cggggcgttcagaactacattctgcaggaagttcagcgcgtataccgtaaccagggcgta
gaaatcaacgataagcacgtggaagttatgatccgtcagatgctgcgtaagatccgtatc
gtagatgcggggaatacaacgctgcttcctggctccttcgttgatatgcatgaatacgag
gaagccaacaaggtggcgctctttgcaggcgaggagcctgcggtcgccaagccggttctt
ctcggtattaccaaagcatcgctggagaccgactccttcctgtcggccgcttccttccag
gagacgacacgtgtcctgacggatgccgctattaagggtaaggtagaccagctgctgggt
ctcaaagagaacgtcattatcgggaaactgatcccggccggtacagggatgtcgagatac
cgcaatatccggatcacggatcctaatgctgagccgctcgatgaagaagtaaccgaggcg
gaagcagtaacggtagagtaa
DBGET
integrated database retrieval system
